KEGG   Dehalobacter sp. CP: AAH944_07120
Entry
AAH944_07120      CDS       T11158                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
deha  Dehalobacter sp. CP
Pathway
deha02024  Quorum sensing
deha03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:deha00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AAH944_07120 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    AAH944_07120 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:deha03019]
    AAH944_07120 (hfq)
   03036 Chromosome and associated proteins [BR:deha03036]
    AAH944_07120 (hfq)
Messenger RNA biogenesis [BR:deha03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     AAH944_07120 (hfq)
Chromosome and associated proteins [BR:deha03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    AAH944_07120 (hfq)
SSDB
Motif
Pfam: Hfq Hfq_1 LSM
Other DBs
NCBI-ProteinID: XOF54995
LinkDB
Position
1405368..1405613
AA seq 81 aa
MNKSPINLQDVFLNQIRKDNIPVTIYLVNGFQLKGLVKGFDNFTVVLDYEGKQQMVYKHA
ISTIMPMRQVNLNALVGEMTE
NT seq 246 nt   +upstreamnt  +downstreamnt
atgaataaatcaccgattaacttgcaggatgttttcttgaaccaaatccgcaaagataac
atacctgttacgatctatttggtcaatggattccagcttaaaggattagtcaaaggtttt
gataattttacggttgttctggactacgaaggcaaacaacaaatggtatataaacatgcc
atttctaccataatgccaatgagacaagtcaatttaaatgccttagtcggggaaatgact
gagtaa

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