Dehalobacter sp. CP: AAH944_12455
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Entry
AAH944_12455 CDS
T11158
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
deha Dehalobacter sp. CP
Pathway
deha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
deha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AAH944_12455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
deha03019
]
AAH944_12455
Messenger RNA biogenesis [BR:
deha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AAH944_12455
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Lactamase_B_3
Motif
Other DBs
NCBI-ProteinID:
XOF53318
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All DBs
Position
2514931..2516730
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AA seq
599 aa
AA seq
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MTKENKLQIIPLGGLGEIGKNMTVIRYNNKIILVDAGLTFPNEDLLGIDIVIPDYTYLIE
NQAMVAGILITHGHEDHIGALPYLLKDLNVPVYGTRLTIGLIQSKLKEANITKATLNVIH
PNDTVRLGAFRVEFINISHSIPGSVGLAIHTPIGTIVHTGDFKLDHTPVSGDVLDIHKFT
ELGEHGVLCLMSDSTNVDRPGFTMSERSVGQNIDEAFFHAEGRIIFASFASNINRLQQAI
SAAVKCQRKVAAIGRSMVNVINIAMDLGYLDMPEGTLIEVDKAMDYPSNQLCILTTGSQG
EPMSALSRIASGDHRQISISENDTVIISASAIPGNEKAISRNIDQLLKLGAHVIYEQISG
MHVSGHASEEELKLMFSMVKPKYFLPVHGEYRMLVKHAELAQQVGIPKENIFIAENGSVL
EFTDEGAKMAESIPAGRVLIDGFGIGDVGNIVLRDRKQLSQDGILIAVLTVSRPTGALVA
GPDVVTRGFIYVRESEEIISEVRCLIREAMQECQQKGINQWAPIKNKVKDIVGKHLYQRT
GRRPMILVIIQEVNSEAIKDANKKDTAAREATSKPPNYKEMAVKARPKRTMKPKIQAPT
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaaagagaacaaactgcaaattattcccctcggaggtctcggggaaatcggcaag
aacatgaccgtcatccggtataataataaaattatcttggttgatgccggtctgacattt
ccgaatgaagacctcttaggtattgacatcgtgattccggactatacgtatttgattgaa
aaccaggcaatggttgcagggatactcattacccatggccatgaagatcatattggggct
ctcccttatctattgaaggatcttaatgtccctgtttatgggacacgccttacaattggc
ttgattcagtccaagctgaaggaagcaaatattacaaaagcgacactcaacgtcattcat
ccgaatgatacagtccgactcggcgctttccgggttgaattcatcaacatcagccacagt
atcccgggctctgtcggcctggcaatccatacaccgattggtaccattgtccataccggg
gactttaagctcgaccatacacctgtcagcggcgatgtcctggatatacacaaatttacc
gaattaggggaacacggcgttctgtgcctgatgtccgacagcacaaatgtcgaccgtccc
ggctttaccatgtccgaacggtctgtcggccaaaatattgatgaagcctttttccatgcc
gaaggacgaattatctttgctagttttgcttcaaatattaataggctgcagcaggcgatc
tccgctgcggtcaaatgccaacgcaaagttgccgcaatcggacgaagcatggtcaatgtc
attaatattgcgatggatctgggttatcttgatatgccggagggaaccctgattgaggta
gacaaggcaatggattatcccagcaaccagctctgcatcctgactacaggcagccagggg
gaaccgatgtcggccttaagcagaatagccagcggcgatcaccgccagatctcaatcagt
gagaacgacacggtcattatttcggccagcgcgattcccggcaacgagaaagccatttcc
cgtaatatcgaccaactgctcaaactcggtgcgcatgtcatctatgagcagatttcagga
atgcacgtttcgggacatgccagcgaagaagaacttaaactaatgttcagcatggtgaaa
ccgaaatacttccttcctgtgcatggtgagtaccgtatgcttgtcaagcacgctgaactc
gcgcagcaggtcggtatccctaaagaaaatatttttattgccgaaaacggcagtgttctg
gaatttacggacgagggcgctaaaatggccgaaagtattccggcaggcagagttttgatc
gatggtttcgggatcggtgatgtcggcaatattgtactgcgtgaccgtaagcagttgtcg
caggacgggatattgattgctgttctgactgtcagccgtccgactggtgcgttggttgca
ggacctgatgtcgtgacccgcggatttatttatgtgcgggagtcggaagaaattatcagc
gaagtcaggtgcctgatccgagaggctatgcaggaatgccagcaaaagggtatcaaccaa
tgggcgccaatcaaaaacaaggtcaaagatattgtcggaaaacacctctatcagagaacc
ggcagacgtccaatgattctggtcatcattcaggaagtaaacagcgaagcaatcaaggac
gcaaacaagaaagacactgctgccagagaagcaaccagcaaaccgcccaactacaaggaa
atggccgtaaaagcgcgtccgaaaagaacaatgaagcctaagattcaagccccgacatga
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