Devosia sp. I507: C4375_07120
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Entry
C4375_07120 CDS
T05346
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dei
Devosia sp. I507
Pathway
dei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4375_07120 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dei03019
]
C4375_07120 (pnp)
03016 Transfer RNA biogenesis [BR:
dei03016
]
C4375_07120 (pnp)
Enzymes [BR:
dei01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
C4375_07120 (pnp)
Messenger RNA biogenesis [BR:
dei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
C4375_07120 (pnp)
Transfer RNA biogenesis [BR:
dei03016
]
Prokaryotic type
tRNA degradation factors
C4375_07120 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH-I_KHDC4-BBP
OB_RRP5_4th
aRib
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
AVF03518
LinkDB
All DBs
Position
1499245..1501380
Genome browser
AA seq
711 aa
AA seq
DB search
MSIKFDHHKVELNWGGQPLTLETGKMARQADGAVLATLGETVVLATVVSAKSPKAGIDFF
PLTVNYQEKYFAAGKIPGGYFKREGRPTENETLVSRLIDRPIRPLFPDGYKNETQVVVTV
LQHDLENNPDVLAMVAASAALTISGVPFMGPIGAARVGYVDGEYVLNLPVDRRSDSKLDL
VMAGTADAVLMVESEAHELSEEVMLGAVMFGHAESRKVIDAIIQLAELAAKDARDFEPED
NSALEAEMLGFIETELRDAYKLTKKEERYAAVDAAKAKVKEKFAAQIEDGTYAAETIGAV
FKSLQAKVVRWNVLDTGLRIDGRDLTTVRPIVSEVGVLPRTHGSAIFTRGETQALVVATL
GTADDEQFIDSLEGTYKQNFLLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAINPIRP
SIEEFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPMKRPVAGIAMGLILEGEKYA
VLSDILGDEDHLGDMDFKVAGTEEGVTSLQMDIKIAGITEEIMKIALAQAKEGRIHILGE
MAKALAESRGEVGEFAPRIETLKIPTDKIREVIGTGGKVIREIVEKTGAKINIEDDGTVK
VSSSDGSQIDAAIKWIKSITDEPEVNAIYQGTVVKTADFGAFVNFFGAKDGLVHISQLAD
QRVAKTTDVVKEGDKVWVKLLGFDERGKVRLSMKVVDQETGKEIAKEDAAE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatcaagtttgatcaccacaaggttgagctcaactggggcggtcagcctctgacg
ctcgaaaccggcaagatggcccgccaggccgatggcgccgtgctcgccacgctgggcgaa
accgtcgtgctcgccaccgttgtcagcgccaagtcgcccaaggcgggcatcgacttcttc
ccgctgaccgtgaactaccaggaaaaatactttgccgccggcaagatcccgggtggctat
ttcaagcgcgaaggccgtccgactgaaaacgaaaccctggtttcgcgtctcatcgaccgc
ccgatccgcccgctgtttcccgatggctacaagaacgagacccaggtggtcgtcaccgtg
ctgcagcatgatctggaaaacaatccggacgtgctggccatggtcgcggcttcggctgcg
ctgaccatttcgggcgtgcccttcatgggcccgatcggcgcggcccgcgtcggttacgtg
gacggcgaatatgtgctcaacctgccggtcgaccgccgctcggactcgaagctcgacctg
gtcatggccggcactgccgacgccgtgctgatggttgaatcggaagcccatgagctttcc
gaagaggtgatgctgggcgccgtgatgttcggccatgccgagagccgcaaggtgatcgac
gccatcatccagctcgccgaactggctgccaaggacgcccgcgatttcgaacccgaggac
aattcggcgctggaagccgaaatgctcggtttcatcgagaccgaattgcgcgacgcctac
aagctgaccaagaaggaagagcgctacgccgccgtcgacgccgccaaggccaaggtcaag
gaaaagtttgccgcccagatcgaagacggtacctatgccgccgagaccattggcgcggtg
ttcaagtcgctgcaggccaaggtggtgcgctggaacgtgctggacacgggcctgcgcatt
gatggccgcgacctgaccacggtccgcccgatcgtgtcggaagtgggcgtgctgccgcgc
acccatggctcggcgatctttacccgtggcgaaacacaggcgctggtcgttgccacgctg
ggcactgccgatgacgaacagttcatcgacagcctggaaggcacctacaagcagaacttc
ctgctgcactacaacttcccgccctactcggttggtgaagccggccgcatgggttcgccc
ggccgccgcgaaatcggtcacggcaagctcgcctggcgcgccatcaacccgatccgcccc
tcgatcgaggaattcccctatacgttgcgcgtggtctcggaaatcaccgagtccaacggc
tcgagctcgatggcaaccgtatgcggcacctcgctggcgctgatggatgccggcgtgccg
atgaagcgcccggtggccggcattgccatgggcctgatcctggaaggcgagaaatacgcc
gtgctcagcgatatcctgggtgacgaagatcacctgggcgacatggacttcaaggtggct
ggcaccgaagagggtgtcacctcgctgcagatggacatcaagatcgccggtatcaccgaa
gagatcatgaagatcgccctggcccaggccaaggaaggccgcatccacattctgggtgaa
atggccaaggccctggccgagagccgcggtgaagtgggcgagttcgccccgcgcatcgag
accctcaagatcccgaccgacaagatccgtgaagtgatcggcaccggcggcaaggtgatc
cgcgagatcgtggaaaagaccggcgccaagatcaatatcgaagacgacggcaccgtgaag
gtctcgtcctcggacggctcgcagatcgatgccgccatcaagtggatcaagtcgatcacc
gatgagcccgaagtcaacgccatctatcagggtacagtcgtcaagaccgctgatttcggc
gccttcgtgaacttcttcggggccaaggacggcctggtgcacatctcccagctcgccgac
cagcgcgtggccaagaccaccgatgtggtcaaggaaggcgacaaggtctgggtcaagctg
ctcggctttgacgagcgcggcaaggtgcgcctgtcgatgaaggtcgttgaccaggaaacc
ggcaaggaaatcgccaaggaagatgcagccgaataa
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