Devosia sp. I507: C4375_13060
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Entry
C4375_13060 CDS
T05346
Name
(GenBank) ATP-dependent helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dei
Devosia sp. I507
Pathway
dei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4375_13060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dei03019
]
C4375_13060
Enzymes [BR:
dei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C4375_13060
Messenger RNA biogenesis [BR:
dei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C4375_13060
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AVF05956
LinkDB
All DBs
Position
2690672..2692090
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AA seq
472 aa
AA seq
DB search
MKDKSLNDFTSLGLPTLITDSLTAGGFTEPTKIQAQAIPKLLEGRDMMGIAQTGSGKTAA
FGLPILAGLLELTGRPRPMTTRALILAPTRELAVQIDENIRKFAGSKMKLDTVLVLGGVS
RYHQVQKIAKGVDVVVATPGRLKDLLDDNKIRLNETRWLVLDEADRMLDMGFIAPVRAIA
KAIGLRRQTMLFSATMAAEVEDLAKSLLKEPIKVEAAPQGSTVVKIDQRVIMSGSKAKRG
VLNDLLGDEAEGMERVIVFARTKHGADRVAKNLAIDGHDAAAIHGNKSQNARQAALKGFA
SGGVRILVATDIAARGIDVKDITHVVNYDLPDDPENYVHRIGRTGRNGASGIAITLCDGT
EKSKLRDVERLIRRTLPVSGDLNLVEEAAAPRQQRSNAGAPGGARTARNPKSKSPRKFNT
PRPGGERSKTGEGMPQSARPAGNKPTSAKPGKPRWNKGQRDAGRARRASANA
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacaagagtttgaacgattttacctcgctcggcctgccgacactgatcactgac
agcctgactgccggcggctttaccgagcccaccaagattcaggcccaggccatccccaag
ctgcttgagggccgggacatgatgggcattgcccagactggttctggcaagactgcggca
tttggcctgccgatcctggccggccttctcgagctgaccggtcgcccccggccgatgacg
acgcgcgcgctgatcttggcgccgacgcgtgaactggccgtgcagatcgacgagaatatc
cgcaagtttgccggctcgaagatgaagctcgatacggttctcgtgctgggtggcgtgtcg
cgctaccatcaggtgcagaagattgccaagggtgtcgacgtggtcgtggccacaccaggc
cgtctcaaagatctgctggacgacaacaagatccgcctcaatgaaacgcgctggctggtg
ctggacgaggccgaccgcatgctcgatatgggcttcattgcccctgtgcgggccattgcc
aaggcaattgggctgcgccgccagaccatgctgttctctgccaccatggcggcagaagtc
gaagatctggcaaaatcgttgctgaaagagccaatcaaggtcgaggccgcgccgcaggga
tctaccgtagtcaaaatcgaccagcgggtgatcatgtccggctccaaggccaagcgcggc
gtgctcaacgatctgctcggcgacgaggccgagggcatggagcgggttattgtctttgcc
cgcaccaagcatggcgccgaccgggtggccaagaacctcgccatcgatggacatgacgcc
gctgccattcacggcaacaagagccagaatgcccgccaggcagcgctcaagggctttgcc
agcggcggggtgcgcattctggtggcgaccgatatcgcggcgcgcggcatcgacgtcaag
gacatcacccatgtggtcaattatgacctgccggatgatcccgaaaactatgtgcaccgc
attggccgcacgggccgtaacggcgcctcgggcattgccattacgctgtgtgatggtacg
gaaaagtccaagctacgcgatgtcgaacggctgatccgccggacacttccggtgtcgggc
gatctgaacctggtcgaagaagccgccgcgccacgccaacagcggagcaatgcgggcgca
ccgggcggagcacgcacggcccgcaacccgaagtctaaaagcccacgcaagttcaatacg
ccgcgcccgggtggcgagcgcagcaagacgggcgaaggcatgccacagtctgcccggcca
gcgggcaataagccgactagtgccaaacctggcaagccgcgctggaacaagggtcagcgc
gatgcaggccgtgcccggcgcgcttcagccaacgcctga
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