Devosia sp. I507: C4375_16665
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Entry
C4375_16665 CDS
T05346
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dei
Devosia sp. I507
Pathway
dei03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dei00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C4375_16665 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dei03021
]
C4375_16665 (rpoC)
03400 DNA repair and recombination proteins [BR:
dei03400
]
C4375_16665 (rpoC)
Enzymes [BR:
dei01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C4375_16665 (rpoC)
Transcription machinery [BR:
dei03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C4375_16665 (rpoC)
DNA repair and recombination proteins [BR:
dei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C4375_16665 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RnfC_N
Apocytochr_F_C
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
AVF05169
UniProt:
A0A2L1S9T4
LinkDB
All DBs
Position
3409098..3413282
Genome browser
AA seq
1394 aa
AA seq
DB search
MNHHSHVMDPFNPAVPVQTFDQMKISIASPEKILSWSYGEIKKPETINYRTFKPERDGLF
CARIFGPVKDYECLCGKYKRMKFKGVICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFL
KSLPSRIALLLDMTLKDIERILYFENYVVLDPGLTPFTQNELLTEEQFLDAQDEYGADSF
TAKIGAEAIREILLGLDLEKIAADLRVEIAEATTELKPKKLAKRLKIVEQFIVSGNKPEW
MIMTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEK
RMLQEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIT
VGPNLKLHQCGLPKKMALELFKPFIYSRLEAKGFSSTVKQAKKLVEKEKPEVWDILDEVI
REHPVLLNRAPTLHRLGIQAFEPMLIEGKAIRLHPLVCSAFNADFDGDQMAVHVPLSLEA
QLEARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLSLMNDNEPGEGMAFGSYAELEHA
LDNKVVTLHTKIKARVPAWDAEGKQTTEIVETTPGRMLIGQILPINPAVPFATANQLMTK
KMISKMIDTVYRGCGQKETVIFCDRVMQLGFKNACDAGISFGKDDMVIPASKYTIVEDTR
KQVEEFEQQYNDGLITQGEKYNKVVDAWAKCGDKVAEEMMDAIRTVQIDEETKRQKPINS
VYMMSHSGARGSPAQMKQLAGMRGLMAKPDGSIIETPITANFKEGLNVLEYFNSTHGARK
GLADTALKTANSGYLTRRLVDVAQDAIIVSEDCGTERGLTMEPIVDAGQVVASLGQRILG
RTTADDVFHPISGDLIAPKGTLLEEKHVDVIEEARIQSVRIRSPLTCDMRQGCCAACYGR
DLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVVDSSFLEAGAEGKIEVRN
PNLATVEGGKQVVMARNVSLAIVDADGKERTTHKVTYGSKLLIKEGDTVRRGQRLAEWDP
YTRPILAEVEGEVVFEDLVDGASVAENTDEATGFTKRVVIDWRGNQRGEGLKPALAIARG
GAIAKVDRGGEARYLLSVDAVIAVEPGEKVAPGDVLARIPLESAKTKDITGGLPRVAELF
EARRPKDHAIIAEIDGTIRFGRDYKNKRRVIIEPTEEGADPVEYLIPKGKPFHLQEGDTI
EKGEYILDGNPAPHDILAIKGVEELARYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKV
EIVEPGESGLLKDEQLDKLDFDELNDQLIAEGKKPATANPVLLGITKASLQTRSFISAAS
FQETTRVLTEAAVSGKADLLEGLKENVIVGRLIPAGTGAGQSKAKQIAAKRDDLILEERR
RQAETVQIAAPAAE
NT seq
4185 nt
NT seq
+upstream
nt +downstream
nt
atgaaccatcattcccacgtcatggacccgttcaacccggccgtccccgtgcagactttc
gatcagatgaagatctcgatcgcgagccccgaaaagatcctgtcctggtcctatggcgaa
atcaaaaagcctgagaccatcaattaccgtacgttcaagcccgagcgtgacggcttgttc
tgcgcccgtatctttggtcccgtgaaggactatgagtgcctgtgcggcaagtacaagcgc
atgaagttcaagggcgtcatctgcgaaaagtgcggtgtggaagtcactctgagccgcgtg
cgccgcgagcgcatgggccatatagagctggccgctccggtcgctcacatctggttcctc
aagtccctgccgagccgcattgcgctgctgctcgacatgacgctgaaggatatcgaacgt
attctctatttcgagaactatgtcgttctcgatcctggcctgaccccgttcacgcagaac
gagctgcttaccgaagagcagttcctggatgcacaggatgagtacggtgccgacagcttc
accgccaaaatcggtgccgaagcgatccgcgaaatcctgctcggcctcgatctggaaaag
atcgcggctgacctgcgcgtggaaattgccgaggcaaccacagagctcaagcccaagaag
ctggccaagcgtctcaagatcgtcgagcagttcatcgtttcgggcaacaagcccgaatgg
atgatcatgaccgtcattccggtcattccgcctgagctgcgcccgctggtgccgctggat
ggcggccggttcgccacatcggatctgaacgacctctatcgtcgcgtcatcaaccgcaac
aatcgcctcaagcgcctgatcgagctgcgtgcgcccgatatcatcatccgcaacgaaaag
cgcatgctgcaggaagcggtcgacgcgctgttcgacaatggccgccgcggccgcaccatt
accggtgcgaacaagcgtccgctgaagtcgctgtccgacatgctcaagggcaagcagggc
cggttccgccagaacctgctcggcaagcgcgttgactattccggccgttcggtgatcacc
gtgggcccgaacctgaagctgcaccagtgcggtcttcccaagaagatggcgctcgagctg
ttcaagccgttcatctattcgcgcctggaagccaagggcttcagctcgaccgtgaagcag
gccaagaagctggtggaaaaggaaaagccggaagtctgggatatcctggatgaggtgatc
cgcgagcatccggttctgctcaaccgtgcgccgaccctgcaccgtctcggcatccaggcc
ttcgagcccatgctgatcgaaggcaaggccattcgtctgcacccgcttgtctgctcggcc
ttcaacgccgacttcgacggcgaccagatggccgtgcacgttccgctctcgctggaagcc
cagcttgaagcacgcgtgctgatgatgtcgaccaacaacattctgcatcccgccaacggt
cagccgatcattgtgccctcgcaggacattgtacttggtctctattatctctcgctgatg
aacgacaatgagccgggtgaaggcatggctttcggttcctatgcggaactggaacacgcg
ctcgacaacaaggtcgtgaccctgcacaccaagatcaaggcccgcgtgccggcttgggat
gctgaaggcaagcagaccaccgagatcgtggaaacgaccccgggccgcatgctgatcggt
cagatcctgccgatcaatccggcggtgccgttcgcgacagccaaccagctgatgaccaag
aagatgatctccaagatgatcgacaccgtttatcgcggttgcggtcagaaggagacggtc
atcttctgtgaccgcgtcatgcagcttggcttcaagaacgcctgtgatgccggcatttcg
ttcggtaaggacgacatggttatccctgcgtccaagtacacgatcgtggaagacacgcgt
aagcaggtcgaagagttcgagcagcagtacaatgacggcctgatcacccagggcgaaaag
tacaacaaggtcgtggacgcctgggccaagtgtggtgacaaggttgccgaagagatgatg
gacgcgatccgtaccgtccagatcgatgaggaaaccaagcgccagaagccgatcaactcg
gtctacatgatgagccattcgggtgcgcgtggttcgccggcccagatgaagcagcttgcc
ggcatgcgcggcctgatggccaagccggacggctcgatcatcgaaacgccgatcaccgcg
aacttcaaggaaggcctgaacgtgctggagtacttcaactccacccacggtgcccgtaag
ggtctggccgataccgctctgaagacggcgaactcgggttacctgacccgtcgcctggtg
gacgtggctcaggacgcgatcatcgtgtccgaagactgcggcaccgagcgtggcctgacc
atggagcccatcgtggacgccggtcaggttgtggcttcgctgggtcagcgcattctgggt
cgcacgacggccgacgatgtgttccacccgatttcgggcgatctgatcgcgccgaagggc
acgctgcttgaagaaaagcatgtcgacgtgatcgaagaggcccgtatccagtcggtccgc
attcgttcgccgctgacctgcgacatgcgtcagggttgctgcgcggcctgttacggtcgc
gacctggcacgcggtactccggtcaatatcggtgaagctgtcggcgttatcgctgctcag
tccatcggtgaacctggtacccagctcaccatgcgtacgttccacattggtggtaccgca
caggtggtggactcgtccttcctcgaggctggtgccgagggcaagatcgaagtccgcaat
ccgaacctggcaaccgtcgaaggtggcaagcaggtcgtcatggcccgtaacgtgtcgctt
gcgatcgttgacgctgacggcaaggagcgtaccacgcacaaggtaacctatggttccaag
ctgctgatcaaggaaggcgacaccgttcgccgtggtcagcgcctggccgaatgggatccg
tacacccgtccgatcctcgccgaagtagagggtgaagtggtgttcgaggacctggtggac
ggtgcttcggtggcagaaaacaccgacgaggcgaccggtttcaccaagcgcgtggtcatc
gactggcgcggcaatcagcgtggcgagggcctcaagcctgcgctcgccattgcccgtggc
ggtgcgattgccaaggtggatcgtggcggcgaagcccgttacctgctttcggttgatgcg
gttattgccgttgagccgggcgaaaaggttgcaccgggtgacgtcctggcccgtattcct
ctggaaagcgccaagaccaaggacatcaccggcggtctgccgcgtgtggccgagctgttc
gaagcccgtcgtccgaaggatcacgccatcatcgctgagatcgatggtaccatccgcttc
ggtcgcgactacaagaacaagcgccgcgtgatcatcgagccaaccgaggaaggcgctgat
ccggttgaatacctgatcccgaagggcaagccgttccatctgcaggaaggcgataccatc
gagaagggcgaatacatcctggacggcaatccggctccgcatgacatccttgcgatcaag
ggcgtcgaagagctggcacgctatctcgtcaatgagattcaggaggtctatcgcctgcag
ggcgtgctgatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaaggtc
gagatcgtggaaccgggcgagtccggcctgctcaaggacgagcagctcgacaagctggac
ttcgacgagctcaacgatcagctcattgccgaaggcaagaagccggctacggcgaacccg
gtgttgctgggtatcaccaaggcctcgctgcagacccgttcgttcatctcggcagcctcg
ttccaggagaccacacgcgtcctcacggaagcggctgtctccggcaaggccgacctgctc
gaaggcctcaaggagaacgtcatcgttggccgcctgatcccggcgggtaccggtgccggt
cagtccaaggccaagcagatcgccgccaagcgcgacgatctcatcctggaagagcgtcgc
cgccaggccgagaccgtgcagattgcggcccctgctgccgagtaa
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integrated database retrieval system
