Devosia sp. I507: C4375_17160
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Entry
C4375_17160 CDS
T05346
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dei
Devosia sp. I507
Pathway
dei03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C4375_17160 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dei03400
]
C4375_17160 (mfd)
Enzymes [BR:
dei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C4375_17160 (mfd)
DNA repair and recombination proteins [BR:
dei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C4375_17160 (mfd)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
SecA_DEAD
RecG_dom3_C
Cas3-like_C_2
AAA_16
ERCC3_RAD25_C
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AVF05260
UniProt:
A0A2L1SA05
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All DBs
Position
3497655..3501143
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AA seq
1162 aa
AA seq
DB search
MNDIAGVAPDVRTISNVPDGMQPMVLARLVEQRLKDAPQDPASLVFVARDGRRMQRMAEI
LGAILPGHTVLTLPAWDCLPYDRVSPNTVTIAARMNALAALTSGASGAIVLTAVNALIQK
LPPRDLVETMSFSAAVGRMVDSDRLIAWAANNGYLRVPTVRESGEFAVRGGLVDLFPAGS
DAPLRFDFFGSQLESIRTFDPDSQRTTGTLKRIDLTPMSEVVLNEETIRRFRQNYTAAFG
GNTVDDTLYASVSGGSRYSGTEHWLPFFYDHMDRLADYVGDAPFVFDDQVAEAFAERAEQ
IRDYYEARETARQEPKVAGGGAPYKPIKPELLYDLEAVPTELAGASVVRLSPFLAPDTAR
GDDAGGHIAPSFAAERAASDVNLFQAVVDRLLAERRQGRRVIVACWSMGTRDRMVQVLKD
HGLTNPRLAENWRDAETTSAATTSLVVLPLETGFETKDLLVLSEQDILGERILRPQRRKK
ASDALTEAASLSAGDLVVHVDHGIGRFLGLKVIEAGGAPHECVELQYAGDTKLYLPVENI
ELLTRYGSDDASVALDKLGGVAWQAKKGKLKKRIREMAEQLIKLAAQRLLTKADVVDINT
GAYDEFAARFPYEETEDQLNAIEAVFDDISSGKVMDRLVCGDVGFGKTEVALRAAFAVAL
SGKQVAVVVPTTLLARQHFKTFSERFNGLPVRVRHASRMVSSAELKSTKEGLADGQVDIV
VGTHALLSKSIKFNDLGLLIIDEEQHFGVGHKERLKELKANVHVLTLTATPIPRTLQLAL
TGVRDLSLLATPPVDRLAIRTFISPFDPLSIREALLREKYRGGQSFYVVPRIKDQPDIAE
FLRQQVPEVSFVVANGQMPPGELDDIMNAFYDNKFDVLLATTIVESGLDIPNANTLIVHR
ADQFGLAQLYQIRGRIGRAKQRAYALFTVPPDRKLTDTAERRLGVLQSLESLGAGFQLAS
HDLDIRGAGNLLGDEQSGHIREVGFELYQAMLEEAVANLKSGEEEYEDRNEWSPQISLGM
PVMIPESYVPDLQLRMQLYRKLGDLNEVRDIDAAGAELIDRFGPLPEEVEALLKVILVKS
LCRQANVEKVDAGPKGAVISLRNNEFPNPAGLVKLVSDPGNQVRIKPDQKLVFARNWPSA
EQRLKGAAAILSKLAKLAETGA
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacattgctggggtggcaccagatgtgcgcaccatctccaatgtgccagacggc
atgcaacccatggtgctggcgcggttggttgagcaacgcctgaaggatgcgccgcaggat
cccgccagcctcgtctttgtggcgcgagacggccggcgcatgcagcgcatggcggaaatt
ctgggcgcgatactgcccgggcacaccgtcctgacgctgccggcctgggactgtctgcca
tacgaccgtgtctcgcccaatacggtgaccatcgcagcgcgcatgaacgcgcttgcagcc
ctcaccagcggcgcaagcggggccattgtgcttaccgcagtcaatgcgctgatccagaag
ctgccgccgcgcgatctggtcgaaacgatgagcttttcggccgccgtcggccgcatggtc
gacagcgacaggctgatcgcctgggcggccaataatggctatctgcgcgtgccgacagtt
cgcgaaagtggcgaatttgccgtccgtggtggcctggtcgacctgtttccggccggatca
gacgcgcccttgcggttcgatttcttcggcagccagctcgaatcgatccggacgttcgat
cctgacagccaacgcaccactggtacactcaagcgcatcgacctgacaccgatgagtgaa
gtggtgctcaatgaagagaccatacggcggtttcggcagaattatactgcggcctttggc
ggcaataccgtggacgacacgctctatgcctcggtcagcggcgggtcgcgctattcgggc
accgagcattggcttccgttcttctacgatcacatggaccgcctcgccgattatgtcggg
gatgcgccatttgtgttcgacgatcaggtggctgaggcctttgccgaacgggccgagcag
attcgagactattacgaggcgcgcgaaacggcccggcaggagcccaaagtcgcggggggc
ggggcgccctacaagccgatcaagccagagctgctctatgatcttgaggccgtgccaacc
gaattggcgggcgcttcagtggtgcggctttcgccgttcctagcacctgacacggcgcgt
ggcgacgatgcgggcgggcatatcgcgccgagctttgcggcggaacgggcggcatccgac
gtcaatctgttccaggcggtggtcgaccggttgctggccgaacggcgccaagggcgcagg
gtgatcgtagcgtgctggagcatgggcacgcgcgatcgcatggtgcaggtcctcaaggac
catggcctgaccaatccgcggttggccgaaaactggcgtgatgccgagaccacgagcgcg
gcaaccacctcgctggtggtgctgccgcttgaaaccgggttcgagaccaaggatctgctg
gtcctttccgaacaagacattctgggcgaacgcattctccggccgcagcggcggaagaaa
gcatccgacgctctgaccgaggcggcaagtctgagcgcaggcgacttggtggtgcacgtc
gaccatggtatcgggcggttcctggggctcaaggttatagaggcgggtggggcgccgcat
gaatgcgtggagctgcaatatgccggtgacaccaagctgtacctgccggtcgaaaatatc
gagctactgacccgctatggctccgatgatgcttcggtagcgctggacaagctgggcggc
gttgcctggcaggccaagaagggcaagctcaagaaacgtatccgcgagatggcggagcag
ctgatcaagctggcggcacagcggctgcttaccaaggccgacgtagtcgatatcaatacc
ggcgcctatgacgagttcgcggcgcgtttcccgtatgaggagactgaagaccagctcaat
gccatcgaggcggtgtttgacgacatctcctcgggcaaggtcatggaccggctggtctgc
ggcgatgtgggctttggcaagaccgaagtggccctcagagcggcctttgcggtggctttg
agcggcaagcaagtggccgtggttgtgccgacgactctgttggctcggcagcatttcaag
accttctccgaacgcttcaacggcctgccggtgagggtgcgccatgcctcgcgcatggtg
tcctcggccgagttgaagtccaccaaggagggattggcggacggccaggtcgacatcgtg
gtaggcactcatgccctgctgtcgaaatcgatcaagttcaacgatctggggcttctcatc
atcgatgaggagcagcatttcggcgtgggccacaaggagcgcctgaaggagctcaaggcc
aatgtgcatgtgcttacgctgaccgcgacgccgattccgcggacgctgcagcttgcactg
acgggtgtacgcgacctctctctgttggcgacgccgcccgtggatcgcctggccattcgc
acctttatttcgccgttcgatcctctctcgatccgggaagcgctgctgcgcgagaagtat
cgcggtgggcagagcttctatgtcgttccgcggatcaaggaccagcccgatattgccgag
ttcctgcgccaacaggtgccggaggtgagcttcgtggtcgccaatgggcagatgccgccg
ggtgaactcgatgacatcatgaatgcgttctacgacaacaagttcgatgtgctgctggca
acgacaatcgtggaatcggggctcgatatccccaatgccaataccctgatcgtacatcgt
gccgatcagttcgggctggcgcagctttaccaaatccggggccgcattggccgggccaag
cagcgcgcctatgcactgttcaccgtgccgcctgaccgcaagctgaccgatacggccgag
cggcgccttggtgtgctgcaatcgctcgaaagtctgggcgccggcttccagcttgccagc
cacgacctcgacatccgcggggcagggaacttgcttggtgacgagcagtccggccatatc
cgcgaggtcggtttcgaactctaccaggcaatgctggaggaagccgtcgccaacctcaag
agcggcgaggaagaatacgaagaccgcaacgagtggagcccgcaaatctcgctgggcatg
ccggtgatgattccggagagctatgtgcccgatctgcaattgcgtatgcagctctatcgc
aaactcggcgatctgaacgaggtgcgcgatatcgacgcggcaggtgcagagctgatcgac
aggtttggtcctttgcccgaggaggtggaggccttgctcaaggtgatcctggtcaagtcg
ctgtgccgccaggccaatgtcgagaaggtcgatgccggcccaaaaggtgcggtcatcagc
ttgcgcaacaatgagtttcccaatccggccggtctggtgaagctggtgagcgatccgggt
aatcaggtccggatcaagcctgatcagaaactcgtgttcgcccgtaattggcccagcgcc
gagcagcggctcaagggggcggcagcaatcctgtcaaagcttgcaaaactggcggaaacc
ggcgcttga
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