Devosia sp. I507: C4375_17505
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Entry
C4375_17505 CDS
T05346
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
dei
Devosia sp. I507
Pathway
dei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4375_17505 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dei03019
]
C4375_17505 (rnr)
03016 Transfer RNA biogenesis [BR:
dei03016
]
C4375_17505 (rnr)
Enzymes [BR:
dei01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
C4375_17505 (rnr)
Messenger RNA biogenesis [BR:
dei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C4375_17505 (rnr)
Transfer RNA biogenesis [BR:
dei03016
]
Prokaryotic type
tRNA degradation factors
C4375_17505 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
CSD2
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AVF05317
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Position
complement(3564844..3567123)
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AA seq
759 aa
AA seq
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MAKSPKPKNTSGPKRPRLPVAERLPTRGQLLEALAHEDNIKGKRDLAKVFGIRGDLRRPF
KAMLAELEGEGVITRTRKALRRTAALPHVTVLDIPGDADPDDLHAFPAQWNPEEGEMPRV
RVLVGPHARVVPAPGDRILARIDAGEDAVPDYTAKPMKVLDKPRRAHIGIVRKDEDGARL
IPVDRKQKEMRIAMGDLGEAADGDLVEVEVKFSGRLMIPRARVTAVIGNPHSEGAISLIA
IHNLEIPHVFPQSVIREAEEAREATLKGREDWRDLPLITIDPADAKDHDDAVHAAPDDDE
KNQGGYVVTVAIADVAAYVRSGTALDREAYLRGNSVYFPDRVVPMLPERISNELCSLKEG
VPRAALAVRMVLGADGRKKSHSFHRILMRSAAKLSYQQAQAAIDGNPDDQTGPLLDPILR
PLWDAYAAMASARDQRGPLDLDLPERKILLDEKGLVRDIHVPERLEAHRLIEEMMIAANV
AAAETLEQKRSELLYRVHDEPSSEKLQALREFLGSLDIAVKKSDSVRAADFNGILHQARK
AGNIEQVSEMVLRSQAQAEYSAENYGHFGLNLDRYAHFTSPIRRYADLIVHRALVSALGL
GDDGLTDQEAGKLTGIGQHISATERRAMLAERETSDRLLAQFLAERIGARFMGRVSGITR
SGLFIRLLETGADGFIPASTLGQDYYRFVQERQAMIGERTGETFTLGDRVEVRLLEAAPV
AGALRFELLSEGKRGNPPSGKRLRKGAPRSFGPKGRRKR
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atggccaaatccccaaaaccaaagaacacctccggtcccaaacgcccgcgcctgcccgtg
gccgagcggctccccacgcgcggacaattgctcgaagcactggcccacgaagacaatatc
aagggcaagcgcgacctggccaaggtcttcggcatacgcggggacctcagacgtcccttc
aaggccatgttggctgagcttgaaggcgaaggcgtcatcacacgcactcgcaaggcgctc
cgtcgaactgccgccctgccccatgtcaccgtgctcgatattcccggcgacgccgaccct
gacgacttgcacgccttcccggcgcaatggaacccggaagaaggcgaaatgccgcgcgtt
cgggtgctggttggcccgcatgcccgcgttgtccctgcccccggagaccgcattctggcc
aggatcgatgcgggggaggacgcggttccggactacacggccaagccgatgaaggtgctc
gacaagccacgtcgcgcccatatcggtatcgtccgcaaggatgaagacggcgcccgcctg
atcccggtggaccgcaagcagaaggaaatgcgcatcgccatgggcgacctcggtgaggcc
gcagatggcgatctggtggaagtggaggtgaagttctccggccgcctgatgatcccgcgt
gcccgcgtcaccgcagtcatcggcaatccgcattcggaaggcgccatctcgctgatcgcc
atccacaacctcgaaattccccatgtcttcccgcaaagcgtgatccgcgaagcggaagaa
gcaagggaagccaccctcaagggccgcgaggactggcgcgacctgcccctcatcaccata
gatccggcagacgcaaaggaccacgacgacgcggtccacgccgccccggacgatgacgag
aaaaatcagggtggctatgtcgttacagtcgccattgccgacgtggcggcctatgtgagg
tccggtacggcgctcgatcgcgaggcctatttgcgcggcaactcggtctattttccagac
cgtgtcgtccccatgctgcccgagcgcatctccaacgagctgtgttcgctcaaggaaggc
gtgccgcgtgcggcccttgccgttcgcatggtgctcggcgctgacggccgcaagaagagc
cacagcttccaccgcatcctcatgcgctcggccgccaaactgtcctaccaacaggcccag
gcggcaatcgacggcaatcccgatgatcagaccggcccgttgctcgatcccatcctgaga
cctctttgggatgcctatgcggctatggcctcggcccgcgaccagcgcggcccgctcgac
ctcgaccttccagaacgcaagatcctgctcgatgaaaaggggctggtgcgagacattcac
gtgccagaacgcctggaggcccaccggctaatcgaggaaatgatgattgccgcaaatgtg
gcggcggccgagacgctggagcagaagcgcagcgaactgctctatcgcgtacacgacgaa
ccttcttccgaaaagctccaggccctgcgcgagttcctcggcagtctcgatatagcggtc
aagaaatccgacagcgtgcgcgcggccgatttcaacggcattctccaccaggcgcgcaag
gccgggaatatcgagcaggtcagcgagatggtgctgcgcagccaggcccaggcggaatac
tctgccgagaactacgggcattttggcctcaatcttgatcgctacgctcatttcacctcg
cctatccgtcgctatgccgaccttatcgtgcatcgcgccctggttagcgccctgggtttg
ggcgacgacgggctgaccgatcaggaagcaggcaagctcaccggcatcggccagcacatc
tcggccaccgagcgccgtgccatgctggccgaacgggaaacctctgaccgccttctcgcc
cagttcctggctgaacgcattggcgcccggttcatgggtcgggtctccggcattacccgt
tcgggcctcttcatacgcctgcttgaaaccggcgcagacggcttcatccccgcttcgact
ctcggccaggactattaccgctttgtccaggagcgccaggcgatgattggcgagcgcaca
ggcgaaaccttcactttgggggaccgcgttgaagtgcgtctgctcgaagctgcaccggtg
gccggcgccctgcgctttgagctattgtccgaaggcaagcgcggcaatccgccatctggc
aaacgcctgcgcaaaggcgcaccaaggagcttcggccccaaaggccggagaaagaggtaa
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