Deinococcus sp. D7000: HLB42_16090
Help
Entry
HLB42_16090 CDS
T10857
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
deid Deinococcus sp. D7000
Pathway
deid03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
deid00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HLB42_16090 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
deid03021
]
HLB42_16090 (rpoC)
03400 DNA repair and recombination proteins [BR:
deid03400
]
HLB42_16090 (rpoC)
Enzymes [BR:
deid01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HLB42_16090 (rpoC)
Transcription machinery [BR:
deid03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HLB42_16090 (rpoC)
DNA repair and recombination proteins [BR:
deid03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HLB42_16090 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RPOC_hybrid
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF3898
Motif
Other DBs
NCBI-ProteinID:
QLG12132
LinkDB
All DBs
Position
complement(3330026..3334681)
Genome browser
AA seq
1551 aa
AA seq
DB search
MKDFSKVRIAIASPEKVREWSFGEVEKPETINYRTLKPEREGLFDERIFGPQKDYECACG
KYKRQRYEGKVCERCGVEVTSSKVRRYRMGHIDLATPAAHIWYVKDSPSKIGTLLDLSAG
QLEKVLYFSSFLVTDPRNAQKDGRPLKRGELLTDDEYRELRFGRQETYTIPNGQETVVGD
GEYVTRGQTLGGNVVAKMDGLAQYRFPRRAEIAYREQVEAALPLPADVLVAQETFRAGEI
LAELEQDVSITAPVAGTAFLSDMGEDSVMVVIRESVDAAPAEQDENGEDIEVDTPLGEVL
ARVYIPHGMDVQVAHGEIIEAGALLAEAKAGQRLRVSRDSRLSDVKLPKKGDPTVTAHWT
RRAEYPINPTMHVLVGDGSEVEAGQRVVGAIDTAEEIVAEANGTITLHAPASVIVSKAKV
YPYQDEPLVVIGDRVEPGDELADGGNLRSEISGRIEIDLVRKQVRVIESYDFEAKMGAEA
VKELLDDIDLDTLEAELNEAMKDSSRHKRAKSRKRLEVTRAFKRSGNHPSWMILNTVPVM
PPDLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLIGQGAPDMIIRNEKRMLQEAVDA
LIDNGRRGSPVTNPGSDRSLRSLTDLLGGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLH
QCGVPKRMALELFKPFLFKVLEEKGEVTNIKQARKMLERYRDTRDSVWDALEEVIEDKVV
LLNRAPTLHRLGIQAFEPVLVEGQSIQLHPLVCEAFNADFDGDQMAIHVPLSAQAQAEAR
IQMLASHNLLSPANGEPNVKPSRDIILGIFTLTQLRHDNLGAGTEFADEQAALQALEDGK
VALNSPITVRGTETSPGRLKYTFSSPDEAIMAVERGGIDYQDHVRIRLNGTTYDTSAGRV
MFRRLVQEALGTQAELVDTLVNLDTAYEKDHLKDMVMACFKHLGIEATAGLLDALKDSGF
KLSTSSGITIGIDDIVIPPSKGEILARADEQVAEIEQNYEFGFMTDEERYKQVVQLWNET
KDEIKNAMFDNFSQNYPFNPLWIMSQSGARGNAQQITQLAGMRGLMARPDGSTIEVPIRA
SFREGLTVLEYFISTHGARKGGADTALRTADSGYLTRKLVDVAHEVVVRDVDCGTTDYST
ISLGATDDRSGEWRARKASEIETSIYGRTITADIELSDGRIIREGEMLSLEDVKAITKDA
KILQDIFVRTPLNCRVKSGVCQKCYGYDLSQAKPVSMGEAVGVVAAESIGEPGTQLTMRT
FHTGGVAGSGDITMGLPRVIELFEARKPKVPALIADTTGTIHITEEDERYLIKVEADDAQ
FSGKLHKVSRATRLLPEIKDGSHVEAGQQLTRGAVNPHDLLEHKDNESAQKYLVDEVQRV
YRSQGVKVHDKHIEVIIRQMLRYVEIVDGGSTDLLEGQIVERWEVDGANNALAEDATPSS
WKPVLLGITKSSLTTKSWLSAASFQHTTHVLTEASMKGQVDDLIGLKENVILGKLIPAGT
GLLTVRDMQVADDRTLEKYGESNNSSDSVTGDRSYDDTRPGVVNENVTYTN
NT seq
4656 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttcagcaaagtccgtatcgccattgccagcccggaaaaagtccgcgagtgg
agctttggcgaggttgaaaagcccgagaccatcaattaccgcaccctgaagcccgagcgt
gaggggctgttcgacgagcgcatctttgggccgcagaaggactacgagtgcgcctgcggc
aagtacaagcgccagcgctacgagggcaaggtctgcgagcgctgtggcgtggaagtcacc
agcagcaaggtgcgccgctaccgcatgggccacatcgatctggcgacccctgccgcgcac
atctggtacgtcaaggacagccccagcaagatcggcacgctgctggacctgagcgccgga
cagctggaaaaggtgctgtacttcagctctttcctggtcaccgatccgcgcaacgcccag
aaggacgggcgacccctcaagcgcggcgaactgctgaccgacgacgagtaccgcgaactg
cgcttcgggcggcaggaaacctacaccatccccaacggtcaggaaacggtggtgggggac
ggcgagtacgtcacgcgcggccagaccctgggcggcaacgtcgtcgccaagatggacggt
ctggcccagtaccgtttcccccgccgcgccgagatcgcctaccgcgagcaggtggaggcg
gcgctgcccctgccagccgacgtgctggtggctcaggaaaccttccgcgccggtgaaatc
ctggccgagctggagcaggacgtctccattaccgcgccggtggccggcaccgccttcctg
agcgacatgggcgaggacagcgtgatggtggtgatccgcgagagcgtggacgccgccccc
gccgagcaggacgagaacggcgaggacatcgaggtcgacaccccactgggtgaggtgctg
gcccgcgtctacatcccgcacggcatggacgtgcaggtggcgcacggcgagatcatcgag
gccggcgccctgctggccgaagccaaggccggccagcgcctgcgcgtcagccgtgatagc
cgcctgagcgacgtcaagctgcccaagaagggtgaccccaccgtcaccgcgcactggacc
cgccgcgccgagtacccgatcaaccccaccatgcacgtcctggtgggcgacggcagcgag
gtcgaggccggccagcgggtcgtcggcgccatcgacaccgccgaggaaatcgtcgccgag
gccaacggcaccatcactctgcacgcgccggccagcgttatcgtgtccaaggccaaggtc
tacccttatcaggacgaacccctggtcgtgatcggggaccgcgtggagcccggcgacgag
ctggccgacggcggcaacctgcgctctgaaatctcgggccgcatcgagatcgacctggtg
cgcaagcaggtgcgcgtgatcgagtcctacgacttcgaggccaagatgggcgccgaggcg
gtcaaggaactgctggacgatatcgatctggacacgctggaagccgagttgaacgaggcg
atgaaggactcctcgcgccacaagcgcgccaagtcccgcaagcggctggaagtcacgcgc
gccttcaagcgcagcggcaaccacccctcgtggatgatcctgaacaccgtccccgtcatg
ccgccggatctgcgcccgatggtgcaggtggacggtggacgcttcgcaacgtccgacctg
aacgacctgtaccgccgcctgatcaaccgcaacaaccgcctcaagaagctgatcggccag
ggcgcgcccgacatgatcatccgcaacgagaagcgcatgttgcaggaagccgtcgacgcc
ctgatcgacaacggccggcgcggcagccccgtgaccaaccccggcagtgatcgcagcctg
cgctcgctgaccgacctgctgggcggcaagcaggggcgtttccgccagaacctgctgggc
aagcgcgtggactactccggccgctcggtgatcgtggtcggcccgcagctcaagctgcac
cagtgcggggtgcccaagcgcatggcgctggaactgttcaagccgttcctgttcaaggtg
ctggaggaaaagggcgaggtcaccaacatcaagcaggcccgcaagatgctcgaacgctac
cgcgacacccgcgacagcgtgtgggacgccctggaagaggtgatcgaggacaaggtcgtg
ctgctcaaccgcgcgcccaccctgcaccgtctgggcatccaggccttcgagccggtgctg
gtggaaggccagtccattcagctgcacccgctggtctgtgaagccttcaacgccgacttc
gacggcgaccagatggcgattcacgtccccctcagcgcgcaggcgcaggccgaagcccgc
attcagatgctggcctcgcacaacctgctgtcgccggccaacggcgagccgaacgtcaag
cccagccgcgacatcatcctggggatctttaccctcacccagttgcgccacgacaacctg
ggcgcgggcaccgagttcgccgacgagcaggccgcgttgcaggccctggaagacggcaag
gtggccctcaacagcccgattaccgtgcgcggcaccgagaccagccctggccgcctgaag
tacaccttctccagtcccgacgaggcgatcatggccgtcgagcgcggcggcatcgactac
caggaccacgtccgcatccgcctgaacggcaccacctacgacaccagcgccggacgcgtg
atgttccgccggctggtgcaggaggcgctgggcacccaggccgaactggtggacacgctg
gtcaacctggacaccgcatacgagaaggaccacctcaaggacatggtgatggcttgcttc
aagcacctcggcatcgaggccaccgccggcctgctggacgccctgaaggacagcggcttc
aagctgtcgacctcctcgggcatcaccatcggcatcgacgacatcgtgattcccccgagc
aagggcgagattctggcccgcgctgatgagcaggtggccgagatcgagcagaactacgag
ttcggcttcatgaccgacgaggagcgttacaagcaggttgtgcagctgtggaacgagacc
aaggatgagatcaagaacgccatgttcgacaatttcagccagaactacccgttcaacccg
ctgtggatcatgagccagtccggcgcgcgtggtaacgcccagcagatcacgcagctggcc
gggatgcgcggcctgatggcccgccccgacggcagcaccattgaggtgccgatccgcgcc
agcttccgcgagggcctgaccgtgctggagtacttcatcagcacccacggcgcgcggaag
ggcggggccgataccgcactccgtaccgccgactccggctacctgacccgcaaactggtc
gacgtggcccacgaagtcgtcgtgcgcgacgtggactgcggcaccaccgactacagcacc
atcagcctgggggccaccgacgaccgctccggcgagtggcgcgcccgcaaggccagcgag
atcgagaccagcatctatggccgcacgatcaccgctgacatcgaactctcggatggccgc
atcattcgcgagggcgagatgctgtccctcgaggacgtcaaggcgatcaccaaggacgcc
aagatcctgcaggacatctttgtccgcaccccgctgaactgccgggtcaagagcggcgtg
tgccagaagtgctacggctacgatctgtcgcaggccaagccggtcagcatgggcgaggcc
gtgggcgtggtggccgccgagtcgatcggcgagcccggcacgcagctcaccatgcgcacc
ttccacaccgggggcgtggccggcagcggcgacatcaccatgggtctgccgcgcgtgatc
gagctgttcgaggcccgcaagcccaaggtgcccgcgctgatcgccgacaccaccgggacc
atccacatcaccgaggaagacgagcgctacctgatcaaggtggaggccgacgacgcccag
ttcagcggcaagctgcacaaggtctcgcgcgccacccgcctgttgcccgagatcaaggac
ggctcgcacgtcgaggccggtcagcagctgacgcgcggcgccgtcaatccgcacgatctg
ctggagcacaaggacaacgagtccgctcagaagtatctggtggacgaggtgcagcgcgtg
taccgcagccagggcgtgaaggttcacgacaagcacatcgaagtgatcatccgccagatg
ctgcgctacgtggagatcgtggacgggggcagcacggatctgctggaaggccagatcgtc
gagcgttgggaggtggacggcgccaacaacgcgctggccgaggacgccacccccagctcc
tggaagccggtgctgctgggcatcaccaagagcagcctgaccactaagagctggctgtcc
gccgcctccttccagcacaccacccacgtgctgaccgaggccagcatgaagggtcaggtc
gacgacctgatcggcctgaaggaaaacgtcatcctgggcaagctgattccggcgggcaca
ggcctgctgaccgtccgcgacatgcaggtggccgacgaccgcacgctggagaagtacggc
gagagcaacaacagcagcgactccgtcaccggagaccgcagctacgacgacacccgcccc
ggcgtggtgaacgagaacgtcacctacaccaactaa
DBGET
integrated database retrieval system
