Deinococcus sp. AJ005: DAAJ005_04610
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Entry
DAAJ005_04610 CDS
T06226
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dein
Deinococcus sp. AJ005
Pathway
dein03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dein00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DAAJ005_04610 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dein03021
]
DAAJ005_04610 (rpoC)
03400 DNA repair and recombination proteins [BR:
dein03400
]
DAAJ005_04610 (rpoC)
Enzymes [BR:
dein01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DAAJ005_04610 (rpoC)
Transcription machinery [BR:
dein03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DAAJ005_04610 (rpoC)
DNA repair and recombination proteins [BR:
dein03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DAAJ005_04610 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RPOC_hybrid
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF3898
Motif
Other DBs
NCBI-ProteinID:
QFP75817
UniProt:
A0A5J6YU60
LinkDB
All DBs
Position
529684..534345
Genome browser
AA seq
1553 aa
AA seq
DB search
MKDFSKVRIAIASPEKVREWSFGEVEKPETINYRTLKPEREGLFDERIFGPQKDYECACG
KYKRQRYEGKVCERCGVEVTSSKVRRYRMGHIDLATPAAHIWYVKDSPSKIGTLLDLSAG
QLEKVLYFSSFLVTDPRNAQKDGRPLKRGELLTDDEYRELRFGRQETYTIPNGQETVVGD
GEYVTRGQTLGGNVVAKMDGLAQYRFPRRAEIAYREEVEATLPLPSDVLVDQETFRAGEI
LAELEADVSITAPVAGTAFLSEMGEDSVMVVIRESVDAAPAEQDENGEDIEVETPLGEVL
ARIYVPQGMEVAVAHGEIIDAGAELASAKSGQRLRVSRDSRLSAVKLPKKGDPTVTAHWT
RRAEYPINPTMHVLVGDGSEVEAGQRVVGAIDTAEEITAEANGTITLHAPASVIVSKAKV
YPYEDEPLVVIGDRVEPGDELADGGNLRSEISGRIEIDLVRKQVRVIESYDFEAKMGAEA
VKELLDDIDLDVLEAELNEAMKDSSRHKRAKSRKRLEVTRAFKRSGNHPSWMILNTVPVM
PPDLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLIGQGAPDMIIRNEKRMLQEAVDA
LIDNGRRGSPVTNPGSDRSLRSLTDLLGGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLH
QCGVPKRMALELFKPFLFKVLEEKGEVTNIKQARKMLERYRDTRDSVWDALEEVIEDKVV
LLNRAPTLHRLGIQAFEPVLVEGQSIQLHPLVCEAFNADFDGDQMAIHVPLSAQAQAEAR
IQMLASHNLLSPANGEPNVKPSRDIILGIFTLTQLRHDNLGAGTDFADENAALQALEAET
VSLNSPITVRGVATSPGRLKYNFSSPDEAIMAVERGGLDYQDHVRIRLNGTIYETSAGRV
MFRRLVQEALGTQAALVDTLVNLDTAYEKDHLKDMVMACFKHLGIEATAGLLDALKDSGF
KLSTSSGITIGIDDVVIPPSKGEILARAEEQVAEIEQNYEFGFMTNEERYKQVVQLWNET
KDEVKNAMFDNFSQNYPFNPLWIMSQSGARGNAQQITQLAGMRGLMARPDGSTIEVPIKA
SFREGLTVLEYFISTHGARKGGADTALRTADSGYLTRKLVDVAHEVVVRDVDCGTTDYST
ISLGATDERSGEWRARKASEIETSIYGRTLTADIELSDGSTIREGEMLSLEHVKAITKDA
KILLDIFVRTPLNCRVKSGVCQKCYGYDLSQAKPVSMGEAVGVVAAESIGEPGTQLTMRT
FHTGGVAGSGGGDITMGLPRVIELFEARKPKVPALIADTTGVIHITEEDERYLIKVEADD
AQFSGKLHKVSRATRLLPEIKDGSHVEAGQQLTRGAVNPHDLLEYKDNESAQKYLVDEVQ
RVYRSQGVKVHDKHIEVIIRQMLRYVEIVDGGSTDLLEGQTVERWEVDGANNALPEDATP
SSWKPVLLGITKSSLTTKSWLSAASFQHTTHVLTEASMKGQVDDLIGLKENVILGKLIPA
GTGLLTVRDMQVADDRTLEKYGESNNSSDSVTGDRSYDDTRPGVVNENVTYTN
NT seq
4662 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttcagcaaagtccgtatcgccattgccagcccggaaaaagtccgtgagtgg
agctttggcgaggttgaaaagcccgaaaccatcaattaccgcacgctaaagcctgagcgc
gaaggcttgttcgacgagcgtatcttcgggccacagaaggactacgagtgcgcctgtggc
aagtacaagcgccagcgctacgaaggtaaagtctgcgagcgttgcggcgtggaagtcacg
tccagcaaggtgcgccgctaccgtatgggccacatcgatctggcgacgcctgccgcgcac
atctggtatgtcaaggacagtcccagcaagatcggcacgctgctggacctgagtgccggg
caactggaaaaggtgctgtacttcagctctttcctggtcaccgatccgcgcaacgcccag
aaagacgggcggccccttaagcgcggcgagctgctgaccgacgacgagtaccgcgaactg
cgcttcgggcggcaggaaacctacaccatccccaacggtcaggaaaccgtcgtgggtgac
ggcgagtacgtcacgcgcggccagaccctgggcggcaacgtggtggccaagatggacggc
ctggcccagtaccgtttcccccgccgcgccgagatcgcctaccgcgaggaagtggaggcc
accctgcccctgccgagcgacgtgctggtggatcaggaaaccttccgcgccggggaaatc
ctggccgagttggaagccgacgtgagcatcaccgcccccgtcgccgggaccgccttcctg
agcgagatgggcgaggactccgtgatggtggttatccgcgaaagcgtggacgccgcccct
gccgagcaggacgagaacggcgaggacattgaagtcgaaactccgctgggcgaagtcctg
gcccgcatctacgtgccgcagggcatggaagtcgcggtggcgcacggcgagatcatcgac
gccggagcagaactggcctcggccaagtccggccagcgcctgcgcgtcagccgcgacagc
cgcctgagcgctgtcaagctgcccaagaagggtgaccccactgtcaccgcccactggacc
cgccgcgccgagtacccgatcaaccccaccatgcacgttctggtcggcgacggcagcgag
gtcgaggccggtcagcgcgttgtgggagccatcgacaccgccgaggaaattaccgccgag
gccaacggcaccatcacgctgcacgctcctgccagcgtcatcgtgtccaaggccaaggtc
tacccctacgaggacgaacctctcgtcgtgatcggtgaccgcgtggaacccggcgacgag
ctggccgatggcggcaacctgcgctcggaaatctcgggccgcatcgagatcgatctggtc
cgcaagcaggtccgcgtcatcgagtcctacgatttcgaggccaagatgggcgcggaagcc
gtcaaggaactcctcgacgatatcgatctggacgtgctggaagccgagctgaacgaggcg
atgaaggattcctcgcgccacaagcgcgccaagtctcgcaagcggctggaagtcacgcgc
gccttcaagcgcagcggcaaccacccctcgtggatgatcctcaacaccgttccggtcatg
ccgcccgacttacgcccgatggtgcaggtggacggcggacgcttcgccacgtcggacctc
aacgatctgtaccgccgcctgatcaaccgcaacaaccgcctcaagaagctgatcggccag
ggtgcgcccgacatgatcatccgcaacgagaagcgcatgttgcaggaagccgtggacgcc
ctgatcgacaacggacggcgcggcagccccgtgaccaatcccggctctgaccgcagcctg
cgctcattgaccgatctgctgggcggcaagcaggggcgtttccgtcagaacctgctgggc
aagcgcgtagattactctgggcgctcggtgatcgtcgtcggcccgcagctcaagctgcac
cagtgcggtgtgcccaagcgcatggccctggaactgttcaagcctttcctgttcaaagtg
ctggaggaaaagggcgaagtcaccaacatcaagcaggcccgcaagatgctcgagcgctac
cgcgatacccgcgacagcgtgtgggacgccctggaagaggtgatcgaggacaaggtcgtg
ctgctcaaccgcgcccccaccctgcaccgcctcggcatccaggcctttgagccggtcctc
gtggaaggccagtccatccagttgcaccccctcgtctgtgaagccttcaacgccgacttc
gacggcgatcagatggctatccacgtccccctcagcgcgcaggcgcaggccgaagcccgc
attcagatgctggcttcacacaacctgctgtccccggccaacggcgagccgaacgtcaag
cccagccgcgacatcattctgggcatcttcacgctgacccaactgcgccacgacaacctg
ggcgcaggcacggactttgccgacgagaacgccgccttgcaggcgctggaagccgagacg
gtcagtctcaacagcccgatcacggtgcgtggcgtggccaccagccctggccgtctgaag
tacaacttctccagccccgacgaggccatcatggctgtcgagcgcggtggcctggattac
caggatcacgtccgtatccgcctgaacggcaccatctacgagaccagcgccgggcgcgtg
atgttccgccgtctggtgcaggaagccctgggcacgcaggccgccctggtggataccctg
gtcaacctggacaccgcctacgagaaggatcacctgaaagacatggtgatggcctgcttc
aagcacctcgggatcgaggccaccgccggactgctggatgcccttaaggacagcgggttc
aaactgtccacctcttccggcatcaccatcggcatcgacgacgtcgtgattccgcccagc
aagggcgagatcctggcccgcgccgaggagcaggtcgcggagattgagcagaactacgag
ttcggctttatgaccaacgaggagcgctacaagcaggtggtgcagctctggaacgaaacc
aaggatgaggtcaagaacgccatgttcgacaacttcagccagaactacccgttcaacccg
ctgtggatcatgagtcagtccggcgcgcgtggtaacgcccagcagatcacacagctcgcc
gggatgcgcggcctgatggcccgccccgacggatcgacgattgaggtgccgatcaaggcc
agcttccgcgagggcctgaccgtgctggaatacttcatcagcacgcacggcgcgcgtaag
ggcggggccgataccgcgctgcgcaccgccgactccggctacctgacccgcaagctggtg
gacgtggcccatgaagtcgttgtgcgcgacgtggactgtggtaccaccgactacagcacc
atcagcctgggtgccaccgacgagcgcagcggcgagtggcgtgcccgtaaggccagcgag
atcgaaaccagcatctatggccgcaccctgaccgcagacatcgaactgtccgatggcagc
accatccgtgagggcgagatgctgtctctggagcatgtcaaggcgattaccaaggatgcc
aagatcctgcttgacatcttcgtccgcaccccgctgaactgccgggtcaagagcggcgtg
tgccagaagtgctacggctacgatctgtcgcaggccaagccggtcagcatgggcgaggcc
gtgggcgtggtggccgcagaaagcatcggtgaacccggcacgcagctcaccatgcgcacc
ttccacaccggcggcgtggccggcagcggcggcggcgacatcaccatgggtctgccccgc
gtgatcgagctgttcgaggcccgcaagcccaaggttccggccctgatcgccgacaccacc
ggcgtcatccacatcactgaggaagacgagcgctacctgatcaaggtggaggccgacgac
gcccagttcagcggcaaactgcacaaggtctcgcgcgccacccgcctgctgcccgaaatc
aaggacggctcgcacgtcgaggccggtcagcaactgacgcgcggggctgtcaatcctcac
gatctgctggagtacaaggacaacgagtccgcccagaagtatctggtggacgaagtgcag
cgcgtgtaccgcagtcagggcgtgaaggtccatgacaagcacatcgaagtgatcattcgc
cagatgctgcgctacgtggaaatcgtggacggtggcagcaccgatctgctggaaggccag
accgtcgagcgctgggaagtggacggggccaacaacgccctgcccgaggacgccacgccg
tcgagctggaagcccgttctgttgggcattaccaagagcagcctgaccaccaagagctgg
ctgagcgcggcgtcgttccagcacaccacccacgtcctgaccgaggccagcatgaagggc
caggtcgacgatctgatcggcctgaaggaaaacgtcatcctgggcaagctgattcccgct
ggcaccggcctgctgaccgtccgcgacatgcaggtggccgatgaccgcacgctggagaag
tacggcgagagcaataacagcagcgactccgtgactggagatcgcagctacgacgacacc
cgccccggcgtggtcaacgagaacgtgacctacaccaactga
DBGET
integrated database retrieval system
