Deinococcus sp. AJ005: DAAJ005_04990
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Entry
DAAJ005_04990 CDS
T06226
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
dein
Deinococcus sp. AJ005
Pathway
dein03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dein00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DAAJ005_04990 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dein03019
]
DAAJ005_04990 (rnr)
03016 Transfer RNA biogenesis [BR:
dein03016
]
DAAJ005_04990 (rnr)
Enzymes [BR:
dein01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DAAJ005_04990 (rnr)
Messenger RNA biogenesis [BR:
dein03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DAAJ005_04990 (rnr)
Transfer RNA biogenesis [BR:
dein03016
]
Prokaryotic type
tRNA degradation factors
DAAJ005_04990 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
Motif
Other DBs
NCBI-ProteinID:
QFP78230
UniProt:
A0A5J6YZC2
LinkDB
All DBs
Position
complement(627570..631058)
Genome browser
AA seq
1162 aa
AA seq
DB search
METPVVQAAAEETAPEAEALKPARRGRKPRQAESAPEAVEREAVEPETVEAATDPLILEV
PRKTRGRRKALSDSPLPEMLDGVEAVDMAPKATHAVQIVSASEAVPAVDSTHAVQEASEA
QPAPKPRSQTRGRGGRGKRAQPTPLEEIQPEAEVTETAAIEAAAEPQEEIQPLSPERELV
IAQLRKLGRPVHVRDLERTFTRQAINRIGGWRELEELLDTLTDEGQVIRTRKKTYGLPEA
MSLVRGRFQASAAGFGFVIPDSGGDDFYVPAEQTLEAWNGDIVLVRMEGRGDSGRSEGGR
GGGSPRRGQKGDGSPRASVVRIVQRAYKQLVGTLEYSHGHPILKPDDHRARHRILVLPEG
IEELEAGARVVTELFWPENTGEDEVFGQVTRVLGAEDDPETETEAVIVKFGLRGEFPEPV
LEQAEAIPVEIPAEALHGRLDLRGYNIFTVDGRDAKDFDDAIHIQPTPEGNFVVGVHIAD
VSHYVQEGTPLDEEAFARATSVYLPGRVLPMLPEHLSNGVCSLVPDQDRLTLTALVELSA
EGEILDVKIAPSVINSKARLTYDEVQAYSEATATLPETARNLEGDLHLLLKITTKLRQKR
LREGSLDFKMREVKVDVGKDGRMELIPIREETARGMIEDLMLLANKVVARFLIGRDIPAL
FRIHEEPTLQRFQDVTAAIGRLGFAFPGGEPTPQAYQAVLKEVRGTNRESVVNTLLLRSM
QQAKYSGENLGHFGLAFDEYLHFTSPIRRYPDLLVHRVIKGILSGELKAGNREVALLQGR
LPGMGDHTSERERTASEAERDLTKYYQAKWAQEHLGESFPGNVSGVVASGLYVMLDNGVE
GKLHISNLDDDYYMYLEDAQMLKGRSRGKSFRLGDSVNVTISTVKPLARQTDFTLADPTD
PDYRPGNFNEENDMDSPVKPRARRRDDREQEKREKLQSVPVSEPRKFTLEDPAPAASSSA
DASPRQGGRGRAGQGNQGRGQGRTFGGVSMDGNGGGEVGGNSGGSAGPRRGARRVVTLER
PRNEHLRPVNITVQRMYFGDWTMENMPPDDGNDGGGRRDFNRGGRGVQERGSNNRGSAAR
GERGHTRGGSDRGAVQRPNGRPQGQRGGQSSSQGSSTPQGQAAPPAQAQTAAAQPAQTSA
AQSDDAKRRRRRRGRRGTGGTE
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggaaacccccgtggtgcaggctgccgccgaggaaactgctccagaagctgaagccctt
aaacccgcccgtcggggccgcaaacccagacaggccgagtccgcgccagaagcagttgag
cgggaagccgttgagccagaaacagttgaggcagcaaccgatccgttgattctggaagtt
cccaggaagacgcggggccgccggaaggcgctgtccgactctcccctgcccgaaatgctg
gacggcgtggaagcagtggacatggcaccgaaggccacgcatgccgtgcagatcgtctcc
gcctccgaagcggtcccggcggtggactccacgcacgccgtacaggaagcctccgaggcg
cagccggcccccaagccccgttcacagacgcgcggacgtgggggccggggcaagcgcgcc
cagccgacgcctctagaggaaatccagcccgaagcggaagtaaccgagacagcggccatc
gaagcagcggctgagccgcaagaagaaatccagcccctcagccccgagcgcgaactggtc
atcgcccagctccgcaagctgggacggcccgtgcatgtgcgtgatctggaacgcaccttt
acgcgccaggccatcaaccgcattggcggctggcgcgagctggaagagttgctggacacc
ctgacggacgagggacaggtcatccgcacccgcaagaagacctacgggctgcccgaggcc
atgagcctggtgcgtgggcgcttccaggcgtcggcggcgggctttggcttcgtcattccc
gacagcggcggcgatgatttctacgttcccgccgagcagacgctggaagcctggaacggc
gacattgtgctggtcaggatggaaggccggggcgacagcggacgcagtgaaggtgggcgg
ggcggcggcagtccccggcgcgggcagaagggcgacggcagcccccgcgccagcgtcgtg
cggatcgtgcagcgtgcctacaagcagctcgtcggcacgctggaatacagccacggccac
ccgatcctcaagccggatgaccaccgcgcccgtcaccgcatccttgttttgcctgaaggc
attgaggaattagaggcgggcgcacgggtcgtcaccgaactgttctggcccgaaaacact
ggcgaggacgaggtgttcggtcaggtcacgcgcgtgctgggagccgaggacgatcccgaa
accgagacggaagccgtgatcgtcaagttcggtctgcgcggcgagttccctgaacctgtg
ctggagcaggccgaggccattccagtcgagattccggcggaagccctgcatggccgcctg
gacctgcgcgggtacaacatcttcacggtggacgggcgcgacgccaaggactttgacgac
gccattcatatccagcccacgccagaaggcaacttcgtggtgggcgtgcatatcgcggac
gtgagccattacgtgcaggaaggcacgccgctggacgaggaagcctttgcccgcgccacc
agcgtgtatctgccgggccgcgtgctgcccatgctgcccgaacacctcagcaacggcgtg
tgtagcctggtgcccgatcaggaccgtctcacgctgacggctttagttgagctgtccgcc
gagggtgagattctggacgtcaagatcgcgcccagcgtcatcaactccaaggcgcggttg
acctatgacgaggtgcaggcttacagcgaggccacggccaccctgcccgagacggcccgc
aatctggaaggagacctgcatctcctgctcaagatcaccacaaagctgcgccagaagcgg
ctgcgcgagggatccctggacttcaagatgcgcgaggtcaaggtggacgtgggcaaagac
gggcgcatggagctgatcccgatccgcgaggaaaccgcgcgcggcatgatcgaggacctg
atgctgctggcgaacaaggtggtggcccgtttcctgattgggcgcgacatccccgccctg
ttccgcatccacgaggaacccaccctgcaacgcttccaggacgtgacggcggccatcggg
cggctgggcttcgccttccccggcggcgagccgacgccccaggcgtatcaggccgtgctg
aaggaagtgcgcggcaccaaccgcgagagcgtcgtcaacacgctgctgctgcgttccatg
cagcaggccaagtactcgggcgagaacctgggccacttcggactggcgttcgacgagtac
ctgcacttcacctcccctatccgccgctatcccgatctgctggtccaccgcgtgattaag
ggcatcctgagcggggaactcaaggcgggcaaccgtgaggtggcactgcttcagggccgt
ctgcccggcatgggggaccacaccagcgaacgcgaacgcacggcgtccgaggccgagcgg
gacctgaccaagtactaccaggccaagtgggcgcaggaacatctgggtgagtcgttcccc
ggcaacgtgtcaggggtggtggccagcgggctgtacgtcatgctggacaacggcgtggaa
ggcaagctgcacatcagcaacctggacgacgactactacatgtacctggaagacgcgcag
atgctcaagggccgcagccggggcaagagctttcgcctgggtgacagcgtcaacgtcacc
atcagcaccgtcaagccgctggcccgccaaaccgatttcacgctggccgaccccaccgac
ccggactaccgacccggcaacttcaatgaggagaacgacatggattcacccgtcaaaccc
cgcgcccgccgccgcgatgaccgcgagcaggaaaagcgcgagaaattacagagcgtgccc
gtcagcgagccgcgcaaattcacgctggaagacccggcccccgccgcctcgtcctctgcc
gacgcttccccccgccagggcggacgtgggcgcgcaggccagggcaaccagggccggggc
cagggccgcaccttcggcggcgtcagcatggacggcaatggaggcggtgaagtcggcggc
aacagtgggggcagcgccggcccccggcgcggcgcgcggcgcgtggtcacgctggagcgt
ccccgcaacgaacacctgcgccccgtgaacatcaccgtgcagcgcatgtatttcggcgac
tggaccatggaaaacatgccgcccgacgacggcaacgatggcggtggacgccgggacttt
aaccggggcgggcgcggcgtgcaggagcgcggcagcaacaaccggggcagtgcggcgcgc
ggcgagcgcggccacacgcggggcgggagtgaccggggagcggtccagcgccccaacgga
cgcccgcagggtcagcgcggaggccagagcagttcacagggaagcagcaccccgcagggt
caggccgcaccgcccgcccaggcccagaccgcagccgcgcagccagcccagaccagcgcg
gcccagagtgacgacgccaaacgccgccgccgccgccggggccgcaggggcacgggcggc
acagagtaa
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