Deinococcus sp. AJ005: DAAJ005_09810
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Entry
DAAJ005_09810 CDS
T06226
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
dein
Deinococcus sp. AJ005
Pathway
dein03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dein00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DAAJ005_09810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dein03021
]
DAAJ005_09810
03019 Messenger RNA biogenesis [BR:
dein03019
]
DAAJ005_09810
Transcription machinery [BR:
dein03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
DAAJ005_09810
Messenger RNA biogenesis [BR:
dein03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DAAJ005_09810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
AAA_22
Spore_III_AA
ATPase_2
NACHT
AAA
nSTAND_NTPase5
AAA_14
AAA_24
SNF2-rel_dom
AAA_16
FeoB_N
MMR_HSR1
Motif
Other DBs
NCBI-ProteinID:
QFP76717
LinkDB
All DBs
Position
1667553..1668836
Genome browser
AA seq
427 aa
AA seq
DB search
MSGINAYTATLPFQELQQKILPELHLIAAGYGIDNYRKLKKDALALAIMEHQADAEGQLL
ARGYLEISADGYGFLQSDLLDPNSRTVLVTAGLIKANHLRTGDDVIGRARRPRENERFGS
LVQVEAVNGLDPEAARRRPRFDDLTPTFPEHQLVLEDPGNTDGLSLRVVDLLVPIGRGQR
ALIVAPPKAGKTTLLKQIANSIVKNYPDVTVMVLLVDERPEEVTDFRESVQGAQVVASTF
DEPPQHHVRVAEFVHERARRIVEDGGHVVILLDSITRLARANNLVTPPTGRTLSGGLDSN
ALHWPKRFLGAARNIREGGSLTILATALVETGSRMDDVIFEEFKGTGNAELVLSRRLEER
RIFPALDIIKSGTRREELLLQPEVLKKMWLLRKVISDMDPADAMEMLLTRMGKTRNNVEF
LQNLAGG
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgagcggaatcaacgcctacaccgccacgctgccgtttcaggagctgcagcagaaaatt
ctgccagagctgcacctgatcgccgccgggtacggcatcgacaactaccgcaagctgaaa
aaagatgccctggcgctggcgatcatggagcaccaggccgacgccgaaggccaactgctg
gcgcgcggctacctggaaatcagcgccgacggctacggcttcctgcaatcggacctgctg
gaccccaacagccgcacggtgctggtcacggcggggctgatcaaagccaaccatctgcgg
accggtgacgacgtcattggccgcgcccgccgcccgcgtgagaatgagcgtttcggctct
ctggtgcaggtggaggcggtcaacggtctggaccccgaagccgcccgccgccgcccccgc
ttcgatgacctgacccccacctttccagaacatcaactggtgctggaagaccccggcaac
acggatggcctgagtctgcgcgtcgtcgatttgctggtccccatcggacgcgggcagcgg
gcactgatcgtcgccccgccgaaagccggaaaaaccaccctcctcaagcagattgccaac
tccatcgtcaagaactatcccgacgtgaccgtgatggtgctgctggtggacgagcgcccc
gaggaagtgaccgatttccgcgagagcgtgcagggcgcgcaggtggtggcctctaccttc
gacgagccgccgcagcaccacgtccgggtggccgaattcgtccacgaacgcgcgcgccgc
atcgtggaagacggcggccatgtggtcatcctgctggacagcatcacccgtctggcccgt
gccaacaacctggtcacgccgcccaccgggcgcaccctctcgggcggcctggacagcaat
gcgctgcactggcccaagcgctttctgggcgcggcccgcaacatccgcgagggcggcagc
ctgaccattctggcgacggcgctggtggaaacgggcagccgcatggacgatgtgatcttc
gaggaattcaagggcaccggcaacgccgaactcgttctctcgcgccgtctggaagaacgc
cgaattttccccgcgttggacatcatcaagtccggcacccgccgcgaggagctgctgctt
cagcccgaagtcctgaaaaagatgtggctgctccgcaaagtcatcagtgacatggacccc
gccgacgcgatggaaatgctgctcacgcgcatgggcaagacccgcaacaacgtggaattc
ctgcaaaatctggcgggcggctga
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