Deinococcus sp. AJ005: DAAJ005_16040
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Entry
DAAJ005_16040 CDS
T06226
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dein
Deinococcus sp. AJ005
Brite
KEGG Orthology (KO) [BR:
dein00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dein03016
]
DAAJ005_16040
Enzymes [BR:
dein01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DAAJ005_16040
Transfer RNA biogenesis [BR:
dein03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DAAJ005_16040
Prokaryotic type
tRNA splicing ligases
DAAJ005_16040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QFP77792
LinkDB
All DBs
Position
complement(2927769..2929172)
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AA seq
467 aa
AA seq
DB search
MNGKHITKLGFERKAIGLAVAAAALREGAGLERGEILDELRAVQADPAVYLTGGIYAELA
AELSALAALNESEKGAALRPVPLPYGVWGADLIEPGARAQMDVAMRLPITRAGALMPDAH
VGYGLPIGGVLATENAVIPYGVGVDIGCSMRLSIFAMQPGALKLEEAKTLLLKHTRFGAG
VAFEKREREDHEVLHESTWDDQPLLGHLFEKAAAQIGSSGSGNHFAEFGTLTLGAADLGL
EAGEYLALLSHSGSRGFGAQVAGHFTTLAERLHPNLDPAAKKLAWLSLDSEEGQAYWQAM
NLAGRYALANHELIHARLARALGVDVLASAHNSHNLAWKQHVNGQELIVHRKGATPAAAG
QLGLIPGSMADPGFVVRGRGHGDALASASHGAGRQLGRKAAISKLVKKEVTAYLKERGVT
LMGGGIDEAPQAYKRIEDVIARQTDLVEVVARFTPKVVRMDSGSEDI
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaacggaaagcacatcacaaaactgggattcgagagaaaggccattgggctggccgtg
gctgccgccgccctgcgcgagggcgcgggactggaacgcggcgagattttggacgaattg
cgcgcagttcaagcagaccccgctgtatacctgacgggcggcatctacgcggaactggcc
gcagagctaagcgctctcgctgccttgaatgaaagtgagaagggtgcggccctgcggcca
gttccgctgccctacggcgtgtggggagcggacctgatcgagccgggcgcacgcgcgcag
atggatgtggcgatgcgtctgccgatcacccgcgccggggcactgatgcccgacgcgcat
gtgggttacggcctgccgattggcggcgtgctggcgacggagaatgcggtgatcccgtat
ggcgtgggcgtcgatatcgggtgcagcatgcgcctgagcatcttcgccatgcagcccggc
gcgctgaaactggaagaggcgaaaaccctgctactcaagcacacccgcttcggcgcgggg
gtggccttcgagaagcgcgagcgcgaggatcacgaggttctacacgaaagtacctgggac
gatcagcccctgctgggccacctgttcgagaaggcggcggcgcagatcggcagttctggc
agcggcaaccactttgcggagttcggcacgctgacgctgggcgctgctgacctggggctg
gaggccggggaatacctggcgttgctgtcccacagcggctcgcgcggcttcggggcgcag
gtggccgggcacttcaccactctggccgagcgactgcatcccaacctcgatccagccgct
aaaaagctggcgtggctgtccttggactccgaggaaggacaggcgtactggcaggccatg
aatctggccggacgttacgcgctggccaaccatgagctgatccatgcgcggctggcccgc
gctctgggggtggacgtgctggcctccgcccacaacagccacaatctggcctggaagcag
catgtgaacggccaggaactaatcgtccaccgcaagggggcaacccctgctgctgctggg
caactgggactcatccccggcagcatggccgatcccggtttcgtggtgcgcgggcggggc
cacggggacgccctggccagcgccagccacggcgcgggccgccagttggggcgcaaggct
gccatcagtaagctggtgaaaaaggaagtcacggcttacctcaaggagcgcggcgtcacg
ctgatgggcggcggcatcgacgaggccccgcaggcgtacaagcgcatcgaggacgtaatt
gcgcgtcagaccgatctggtggaggtggtggcccggttcacgccgaaggtggtccgtatg
gacagcggcagcgaggacatctag
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