Pseudodesulfovibrio indicus: AWY79_00015
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Entry
AWY79_00015 CDS
T04404
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
dej
Pseudodesulfovibrio indicus
Pathway
dej03030
DNA replication
dej03430
Mismatch repair
dej03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dej00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AWY79_00015 (dnaE)
03430 Mismatch repair
AWY79_00015 (dnaE)
03440 Homologous recombination
AWY79_00015 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dej03032
]
AWY79_00015 (dnaE)
03400 DNA repair and recombination proteins [BR:
dej03400
]
AWY79_00015 (dnaE)
Enzymes [BR:
dej01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AWY79_00015 (dnaE)
DNA replication proteins [BR:
dej03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AWY79_00015 (dnaE)
DNA repair and recombination proteins [BR:
dej03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AWY79_00015 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
PHP
DNA_pol3_finger
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
DUF4447
Motif
Other DBs
NCBI-ProteinID:
AMK09602
UniProt:
A0A140D8T5
LinkDB
All DBs
Position
2423..5968
Genome browser
AA seq
1181 aa
AA seq
DB search
MAEFVHLHVHTEYSLLDGAIRINDLLTRAKDLGMPAVAITDHGSMYGAVTFYTEAKALGI
KPIIGCEVYVAPGDLDDEEAHLRKEQGGGYHLVLLAKNQQGYKNLIKLVSIGYLDGFYYK
PRVSKHLLKKYSEGLIALSACLAGEVPRKLMNEGVDAGAEMARIYESIFPGNFYLELQDN
GIGKQTRLNELLVKCAEKTGLPLVATNDCHYLTAEDYEAHDTLLCIQTQTTVDAEKRFRM
ETRELYFKTPEEMERAFAHVPEAILNTQRIAEQCNLEIELGNYYFPHYELPEGVSMNEEF
DRLCREGLKRRLATLTYEVDEDKYWKRLDYELGVIIQMGFPAYFLIVQDFINWAKDNRIP
VGPGRGSAAGSIVAWSLKITNLDPIPYDLLFERFLNVERVSMPDIDVDFCERRRLEVVKY
CAEKYGFDRVAQITTFGTMKTKAVIKDVGRALGMSFGETDRIAKLIPDDPGIMAKLLGVE
KAKITVPNAVKGVTELDDMVATDPKVAKLIDISTRLEGLCRHASTHAAGVVISDKPMTEY
LPLYKGKKGEIVTQFDMKKVEKVGLIKFDFLGLRTMTVIEDCLDIIREQGKKAPDLDTLA
LDDPATFAIFAKGDTDGIFQVESSGMRKYLRMLRPDCFEDIVAMLALYRPGPLGMIGAHG
VSMVDEFIMRKHGDIEVTYPHPSLTDTLSPTYGVMVYQEQVMATAMTIANYSLGEGDLLR
RAMGKKIAEEMAKQRSRFLEGARENKIDETVANEIFDTMEKFAAYGFNKSHSAAYALISY
HTAYLKAHFPVEFMAALMSTEMNNTEKIIMYVNACRDMEIKVRQPDINAGQARFSVKDGE
ILFAMAAIKNVGEEAINEIAAERTENGPFKNIFDFCERVNLRRVTKRVLESLIKAGALDC
FSCSRQALLEDLEKAVALGQKKAKEKESGMLNMLDMLGGGAKTEPAHTPTCSLCEEFDDR
EKLQLEKEVLGFFLSGHPLLAYRQDMHRLRTVTLEECKTIPNGTEVRVAVIIPDFKQFIT
RKGDPMAFCTAEDLTTSGEVTMLPNVYAEARELLDADRPLLVQGKIDQRDDQSGPEDAPK
SAKILADKVLFLADAVQGSDQPVSLWIGERNAEDAHLNALKAVLQRYPGSTAVNLGLITR
DSVVNLRLGNGWKVYPGRDFWKEIEAWQNGDAKLYKAANEE
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
gtggccgaattcgttcaccttcacgtccatacagaatacagccttctggacggcgccatc
cgcatcaacgacctgctcaccagggccaaggacctgggcatgcccgcggtggccatcacc
gatcacgggtccatgtacggggccgtgaccttctacaccgaggccaaggcgctcggcatc
aagccgatcatcggctgcgaggtctacgtggcccccggcgacctggacgacgaagaggcc
cacctgcgcaaggaacagggcggcggctaccacctggtgctgctggccaagaaccagcag
gggtacaagaacctcatcaagctggtctccatcggctacctggacgggttctactacaag
ccgcgcgtgtccaagcatctgctcaagaagtactccgaggggctgatcgccctgtccgcc
tgcctggccggcgaggtcccccgcaagctcatgaacgaaggcgtggacgcgggcgcggag
atggcccggatctacgagtccatcttccccggcaacttctacctggagctgcaggacaac
ggcatcggcaagcagacccggctcaacgagctgctcgtcaagtgcgcggagaaaaccggg
ctgcccctggtggccaccaacgactgccactacctgaccgccgaggactacgaggcccac
gacaccctgctgtgcatccagacccagaccacggtggacgcggagaagcggttccgcatg
gagacccgcgagctgtacttcaagacgccggaggagatggagcgggccttcgcccacgtg
cccgaggcgatcctgaacacccagcgcatcgccgagcagtgcaacctggagatcgagctc
ggcaactactatttcccgcactacgagctgcccgaaggcgtgtccatgaacgaggagttc
gaccgcctctgccgcgaaggcctcaagcggcggctcgcgaccctgacctacgaggtggac
gaggacaagtactggaagcggctggactacgagctgggggtcatcatccagatggggttc
ccggcctacttcctcatcgtccaggacttcatcaactgggccaaggacaaccgcatcccg
gtggggccggggcgcggctcggcagccgggtccatcgtggcctggtcgctgaagatcacc
aacctcgacccgatcccctacgacctgctgttcgagcgattcctgaacgtggagcgcgtg
tccatgccggatatcgacgtggacttctgcgagcgccgccgcctggaggtggtcaagtac
tgcgccgagaagtacggcttcgaccgcgtggcccagatcaccaccttcgggaccatgaag
accaaggcggtcatcaaggacgtgggccgggcgctgggcatgtccttcggcgagaccgac
cgcatcgccaagctcatcccggacgaccccggcatcatggccaagctcctgggcgtggaa
aaggccaagatcaccgtgcccaacgcggtcaagggcgtgaccgagctggacgacatggtc
gccaccgaccccaaggtggccaagctcatcgacatttccacgaggctggaggggctgtgc
cgccacgcctcgacccacgcggcgggcgtggtcatctcggacaagcccatgaccgagtac
cttcctctctacaaggggaagaagggcgaaatcgtgacccagttcgacatgaagaaggtc
gagaaggtcgggctgatcaagttcgacttcctggggctcaggaccatgaccgtcatcgag
gactgcctggacatcatccgcgagcagggcaagaaggccccggacctcgacaccctggcc
ctggacgacccggccaccttcgccatcttcgccaagggcgacacggacggcatcttccag
gtggaatcgtccggcatgcgcaagtacctgcgcatgctccgcccggactgcttcgaggac
atcgtggccatgctcgccctgtaccggcccggccccttggggatgatcggcgcgcacggc
gtgtccatggtcgacgaattcatcatgcgcaaacacggcgacatcgaagtcacctacccg
cacccgtccctcacggacaccctgtcgcccacctacggcgtcatggtctaccaggagcag
gtcatggccacggccatgaccatcgccaactactcgctcggcgagggcgacctgctgcgc
cgcgccatgggcaagaagatcgccgaggagatggccaagcagcgctcccggttcctggag
ggcgcgcgcgaaaacaagatcgacgagaccgtggccaacgagatcttcgacaccatggag
aagttcgcggcctacggcttcaacaagtcgcactccgcggcctacgcgctcatctcctac
cacaccgcctacctcaaggcgcatttcccggtggagttcatggccgccctgatgtccacg
gaaatgaacaacaccgaaaaaatcatcatgtacgtcaacgcctgccgcgacatggagatc
aaggtccgccagccggacatcaacgcgggccaggcccggttctcggtcaaggacggggag
atcctgttcgccatggcggccatcaagaacgtgggcgaggaggcgatcaacgagatcgcc
gccgagcggaccgagaacggtccgttcaagaacatcttcgacttctgcgagcgcgtgaac
ctgcgccgggtgaccaagcgggtcctggaatcgctgatcaaggcgggcgcgctcgactgc
ttctcctgctcccgccaggcgttgctggaggacctggaaaaggccgtggcgctcggccag
aaaaaggccaaggagaaggagtccggcatgctcaacatgctggacatgctcggcggcggg
gccaagacggaaccggcccacacccccacctgctccctgtgcgaggagttcgacgaccgc
gagaagctccaactggagaaggaggtcctcggcttcttcctgtccggccatccgctgctg
gcctaccgccaggacatgcaccggctgcgcacggtcaccctggaggaatgcaagaccatc
cccaacggcaccgaggtgcgcgtggcggtcatcatcccggatttcaagcaattcatcacc
cgcaagggcgaccccatggcgttctgcaccgccgaagacctgaccacctccggcgaggtc
accatgctgcccaacgtctacgccgaggcgcgcgagctgctcgacgcggaccgccccctg
ctggtccagggcaagatcgaccagcgcgacgaccagtccgggccggaggacgcgcctaag
tccgccaagatcctggccgacaaggtcctgttcctggccgacgcggtccagggctcggac
cagccggtgtccctgtggatcggcgagcgcaatgccgaggacgcccacctgaacgcgctc
aaggcggtcctccagcgctaccccggctccactgccgtgaacctcggcctgatcacccgc
gactcggtggtcaacctgcggctgggcaacggctggaaggtctatccgggccgcgacttc
tggaaggagatagaggcctggcagaacggcgacgccaagctgtacaaggccgcgaacgag
gaatag
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integrated database retrieval system
