Pseudodesulfovibrio indicus: AWY79_03245
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Entry
AWY79_03245 CDS
T04404
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dej
Pseudodesulfovibrio indicus
Pathway
dej03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dej00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWY79_03245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dej03019
]
AWY79_03245
Enzymes [BR:
dej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AWY79_03245
Messenger RNA biogenesis [BR:
dej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AWY79_03245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AMK10202
UniProt:
A0A126QJM3
LinkDB
All DBs
Position
complement(694480..695589)
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AA seq
369 aa
AA seq
DB search
MTFSNFSLDSRIVAGIKDCGYETPTPIQQQAIPLVLQGHDVMGLAQTGTGKTAAFALPIL
QRLLTGNKSERAIPRVLVLAPTRELALQILENFRDLGKHARVRSAAVIGGVAMNPQIQAF
GHSQVIVACPGRLVRLLSKGAVNLNHIDTLVLDEADRMLDMGFMPDIKRILAKLPARRQN
LLFSATMPADIRKLADKILNNPKTVQVANTKPVESVEHRFLNTQGHLKGEVLGKLLKTID
HQSVLIFTRTKHKAKNLARKLAGAGHASTFLQGNMSQNQRQRALDGFRDGKFSIMVATDI
AARGIDCDRISHVINFDMPDTVETYTHRIGRTGRAGRSGQAVSLVTSEDKTQVRDIERVM
RVKLHQDVI
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgactttttccaacttttcccttgattcccgcatcgtcgccggaatcaaggactgcggc
tatgaaacccccactccgatccagcagcaggccattcccctggtcctgcaagggcatgac
gtcatgggcctggcccagaccggcaccggcaagaccgccgcgttcgccctgcccatcctg
caacggctgctgaccggcaacaaatccgagcgggccatcccccgcgtcctggtcctggcc
cccacccgcgaactcgccctccagatcctcgaaaacttccgggacctgggcaagcacgcc
cgcgtgcgctccgccgcggtcatcggcggcgtggccatgaacccgcagatccaggccttc
ggccacagccaggtgatcgtggcctgccccggccggttggtccggctcctgagcaagggc
gccgtcaacctcaaccacatcgacaccctggtgctggacgaggccgaccgcatgctcgac
atgggcttcatgccggacatcaagcgcatcctggccaagctgcccgcccgcaggcagaac
ctgctcttttcggccaccatgcccgcggacatccgcaagctcgccgacaagatcctgaac
aaccccaagaccgtgcaggtggccaacaccaagccggtggagagcgttgagcaccggttc
ctgaacacccagggacacctcaagggcgaggtcctgggcaagctgctcaagaccatcgac
caccagagcgtgctcatcttcacccgcaccaagcacaaggccaagaacctggcccgcaag
ctcgcgggcgcgggccacgcctcgaccttcctgcagggcaacatgagccagaaccagcgc
cagcgggccctcgacggcttccgcgacgggaaattctccatcatggtggccacggacatc
gcggcgcgcggcatcgactgcgaccgcatctcccacgtcatcaacttcgacatgcccgac
accgtggagacctacacccaccgcatcgggcgcaccggccgcgccgggcgctccggccag
gccgtcagcctggtgaccagcgaagacaagacccaggtgcgcgacatcgagcgcgtcatg
cgcgtcaagctgcaccaggacgtgatctag
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