Pseudodesulfovibrio indicus: AWY79_06105
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Entry
AWY79_06105 CDS
T04404
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
dej
Pseudodesulfovibrio indicus
Pathway
dej03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dej00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWY79_06105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dej03019
]
AWY79_06105
03016 Transfer RNA biogenesis [BR:
dej03016
]
AWY79_06105
Enzymes [BR:
dej01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AWY79_06105
Messenger RNA biogenesis [BR:
dej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AWY79_06105
Transfer RNA biogenesis [BR:
dej03016
]
Prokaryotic type
tRNA degradation factors
AWY79_06105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
OB_RNR_1st
WHD_TBPIP
OB_HELZ2
RNase_II_C_S1
S1CSD-TOTE-2
CSD
AbiEi_4
Motif
Other DBs
NCBI-ProteinID:
AMK10711
UniProt:
A0A126QL58
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All DBs
Position
1307369..1309564
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AA seq
731 aa
AA seq
DB search
MVKKKRSQPRPSTPPLSPATLLKLFKEVKRPMSRAEVIRQLKLKKKDKAAVKDMLKELAQ
KGKLVRIRRGYGLAEAMHCITGRLEIQRQGFGFVVPEDSRRKDIFVNQRDLNDAWHGDRV
VVSVVGEPKAGRSAEGRIIRILERGRKVLPAKVIKRMSGGDWLCRPSDPRLNFGIIAALK
DASVKLEPGDIVLCAPGERIDPTMWEGQITQRLGVETDVSVQEALVKSNHNIRTRFPSGS
MGQAESLPPEPSDKDLHSRRDLTAKPFVTIDGATARDFDDAVLVERLKRGYRLWVAIADV
AHYVAEGSPLDREALERGNSYYFPRSVEPMFPERLSNGLCSLNPDVPRLTMVVKMDTDET
GRTVETEIFPAVIRSHARLTYSLVNDAVIEKQDEARRKIAPDLLPMLELAEELARKINAL
RSKRGSLDFDLPEPEIFFDVHGETSDIRPKQRNFAHQLIEEFMIAANEAVAHFLIERDLP
CLFRIHPPADEEKLKNLFRLLSRTDKSVVMPKEITPKKLQMLVASMQGTDKEYIVNRMLL
RSMKQAKYSPDNEGHFGLASEEYAHFTSPIRRYADLVVHRLVKSALQQGEGTPAPIPGRK
KLLNVANHISSRERVAMDAEREILKRVTVLFMHGKVGETFNGVISHITDFGFYVELKEVM
AEGLIRLSTMDDDYYTYWPQREMLVGERTGRAFSLGQAVEVVLEEASIERLELNFSLKSV
VAAAMDYKDLI
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atggttaagaagaagcgcagccagcccaggccgagcaccccgcccctgtccccggcgacc
ctgctcaagctgttcaaggaagtgaagcggcccatgtccagggccgaggtcatccgccag
ctcaagctcaagaaaaaggacaaggccgcggtcaaggacatgctcaaggagctggcccag
aagggcaagctggtgcgcatccggcgcggctacggcctggccgaggccatgcactgcatc
accgggcggctggagatccagcgtcaggggttcggcttcgtggtcccggaggactcgcgg
cgcaaggacatcttcgtcaaccagcgggacctcaacgacgcctggcacggcgaccgtgtg
gtggtctccgtggtcggcgaacccaaggcggggcgcagcgccgagggccgcatcatccgc
attctggaacgcggccgaaaggtgctgcccgccaaggtgatcaagcgcatgtccggcggg
gactggctctgccgcccgtccgaccccaggctgaatttcgggatcatcgccgcgctcaag
gacgcgtccgtcaagctcgaaccgggcgacatcgtgctctgtgcgccgggcgaacgcatc
gacccgaccatgtgggagggccagatcacccagcggctcggggtggagaccgacgtctcc
gtccaggaagccctggtcaagtccaaccacaacatccgcacccggttcccgtccggctcc
atgggccaggccgaatccctgccgcccgaaccgtcggacaaggacctccactcgcggcgc
gacctgaccgccaagccgttcgtgaccatcgacggggccacggcccgcgacttcgacgac
gccgtcctcgtggagcggctcaagcgcggctaccgcctctgggtggccatcgccgacgtg
gcccactatgtggccgaaggctcgccgctcgaccgcgaggccctggaacgcggcaactcc
tactatttcccccggtccgttgagcccatgttcccggagcgcctgtccaacgggctgtgc
tccctgaaccccgacgtgccccgcctgaccatggtcgtgaagatggataccgacgagacc
ggccgcaccgtggagaccgaaatcttcccggcggtcatccgcagccacgcccggctgacc
tactccctggtcaacgacgccgtcatcgagaaacaggacgaggcgcgcaggaagatcgcc
ccggacctgctacccatgctggagctggccgaggagctggcgcgcaagatcaacgcgttg
cgctccaagcgcgggtccctggatttcgacctgcccgagccggagatattcttcgacgtg
cacggcgagacctcggatatccggcccaagcagcgcaatttcgcccaccagctcatcgag
gagttcatgatcgcggccaacgaggctgtggcccatttcctcatagagcgcgacctgccc
tgcctgttccgcatccaccctccggcggacgaggaaaagctcaagaacctcttccggctg
ctctcgcgcacggacaagtccgtggtcatgcccaaggagatcacgcccaagaagctccag
atgctcgtggcgtccatgcagggcacggacaaggaatacatcgtcaaccgcatgctcctg
cgctccatgaagcaggccaagtactcgccggacaacgagggccacttcggcctggcctcc
gaggagtacgcccacttcacctcgcccatccggcgctacgccgaccttgtggtgcaccgg
ctggtcaagtccgcgctgcaacagggcgaaggcacgcccgcgcccatcccgggccgcaag
aagctgctcaacgtggccaaccacatctcctcgcgcgagcgcgtggccatggatgccgag
cgcgaaatactcaagcgcgtcaccgtgctgttcatgcacggcaaggtcggcgagaccttc
aacggcgtcatctcgcacatcaccgacttcggcttctacgtggagctcaaggaggtcatg
gccgaagggctcatccggctgtccaccatggacgacgattactacacctactggccgcaa
cgcgagatgctcgtgggcgaacgcaccggccgcgccttctccctcggccaagccgtggag
gtcgtgctcgaagaggccagcatcgaacgcctcgaactcaacttcagcctgaaatccgtg
gtcgccgccgccatggattataaagatttgatttag
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