Pseudodesulfovibrio indicus: AWY79_12590
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Entry
AWY79_12590 CDS
T04404
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dej
Pseudodesulfovibrio indicus
Pathway
dej03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dej00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AWY79_12590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dej03400
]
AWY79_12590
Enzymes [BR:
dej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AWY79_12590
DNA repair and recombination proteins [BR:
dej03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AWY79_12590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_16
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AMK11891
LinkDB
All DBs
Position
complement(2779169..2782648)
Genome browser
AA seq
1159 aa
AA seq
DB search
MPAHFPKDISDFMKGTVDSVRVFKSGPGSQALLAVSLLAEGRDVVVVVPGVTEYREMQAL
LTLFSVGKLGGLEQPSWEREWIFLPPYLSRTPEPQGWGERWAALYGLVYRDGPRGVLMTA
DNLLPHWPDENVLRENWATLTKGEEMSPDILLEQLVSWGYVRRKLVTDSGDMAMRGDILD
IHAPGYELPLRLEFFGDVLEEIRLFDPASQRSKADLQEAVLLPVAPCITSGDRAFRARDQ
WDKLRRTGEITPAQEQVLSERLDNNDGFIWPGLYYDSPVGLESFLPRDASFLLSSGGALR
ARLEDRDQAWRDFLKEEERDKGVTLPKRFVIRSHDVARKAWQSARQMVFEELTIGREKSG
LDLPETPYSDFTDIFWQPEASRRPWAALMAGIKEWQSGGETTILSFRTQRSRTKFLTLTE
QENLPVTLEYVPGRPGLYALVSPLRKGMEIGWNRTRVLGEEVLQPQAARARTSGDKAFKG
LDRYEDLSEGDLLVHRDYGLSQFGGLHHLSIGEGANDYLLLFFSGEDKLYLPVDRLNLVQ
RFKGPEGGRTPALDKLGGSRWANTTAKVRKAIEKIAHELVEMYAFRRVAKGYGYGPLDDM
YAEFEATFGFEETPDQEKAVNDVFRDMEKPEPMDRLVCGDVGFGKTEVALRAAFRAALEG
RQTALLCPTTVLAEQHYQTFTRRMEGFPVRVGMLSRFVSPKHQKTVLEAAARGEIDILIG
THRILSKDVELPNLGLLILDEEQRFGVKHKEKLKHFRQNIDVLTLTATPIPRTLQLSLSG
IRGLSVIETPPVDRKPVETAIMEREDLELKAVLRRELDRGGQVYWVYNRVNGLARVADYV
KGLVPDAKVGMAHGQMGEKGLEEAMRDFWHGELDVLVCTSIVESGLDFPNANTLIVDQAQ
LFGLGQLYQLRGRVGRSERQAYAYFVVPSVRDISEIVRKRLRIILDMDYLGAGFKVAMED
LRLRGAGNILGEAQSGQIAKVGLELFLEMLEEEVARIRGEEHARVSDPELNFVFEAHIPG
GYIPDSRERLRYYRALSSASSDMELREYEAEIRDRFGPLPDELDAFFGVLKLKRTLSRLQ
AARAELYPGRAVITWKENAIAASPERLIGWVGERSETTRLLPPAKLEIRYGDAPSMREAL
ETTAADLEGLLDGEKQQGK
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgccagcacatttccccaaagacatatcggacttcatgaaggggaccgtcgattcggtc
cgcgtcttcaaaagcggccccggctcccaggccctgctcgcggtctccctgctggccgag
gggcgggacgtggtcgtggtcgtgcccggcgtgaccgagtaccgggagatgcaggcgctg
ctgaccctgttctccgtcggcaagctcggggggctcgagcagccctcctgggaacgggag
tggattttcctgccgccgtacctttccaggaccccggaaccgcagggatggggcgagcgg
tgggcggccctgtatggcctggtctaccgcgacggcccgcgcggcgtgctcatgaccgcc
gacaacctcctgccccattggccggacgagaacgtcctgcgcgagaactgggccaccctg
accaagggcgaggagatgtccccggacatcctgctcgaacagctggtctcctggggttac
gtccggcgcaagctggtcaccgactccggcgacatggccatgcgcggcgacatcctcgac
atccacgcgccgggttacgaactgcccctccggctggagttcttcggcgacgtgctggag
gagatccggctcttcgacccggccagccagcggtccaaggcggacctgcaggaggccgtg
ctcctgcccgtggccccgtgcatcacctccggggaccgggccttccgggccagggaccag
tgggacaagctgcgccgcaccggggagatcaccccggcccaggagcaggtcctgtccgag
cggctggacaacaacgacggcttcatctggcccggcctgtattacgattctccggtgggg
ctggagagcttcctgccccgcgatgcctcgttcctgctctcttccggcggcgcgctgcgg
gcgcggctggaggaccgggaccaggcgtggcgcgattttctgaaggaggaggagcgggac
aagggcgtgaccctgcccaagcggttcgtcatccgctcccacgacgtggcgcgcaaggcg
tggcagtccgcgcgtcagatggtcttcgaggagctgaccatcggccgcgaaaagagcggc
ctggacctgcccgagaccccgtacagcgatttcaccgacatcttctggcagccggaggcg
tcccgacgcccctgggccgcgctcatggcgggcatcaaggagtggcagagcgggggcgag
accaccatcctgagtttccgcacccagcgctcgcggaccaagttcctgaccctgaccgag
caggagaacctgcccgttaccctggagtacgtgccgggccgccccggcctctacgccctg
gtctcccccctgcgcaagggcatggagatcggctggaaccggacccgcgtcctgggcgag
gaggtcctccagccccaagccgcccgggcgcggacgagcggcgacaaggcgttcaaggga
ctggaccgctacgaggacctgtctgagggcgacctgctggtccaccgcgactacgggctg
tcccagttcggcgggctgcaccatctttccataggggagggggccaacgactacctcctg
ctgttcttctccggcgaggacaagctctacctgcccgtggaccggctcaacctcgtgcag
cggttcaagggcccggaggggggcaggacgcccgccctggacaagctcggcgggagccgc
tgggccaacaccacggccaaggtccgcaaggccatcgagaagatcgcccatgagctggtg
gaaatgtacgccttccgccgggtggccaaggggtacggctacggcccgttggacgacatg
tacgccgaattcgaggccaccttcgggttcgaggagaccccggaccaggagaaggccgtc
aacgacgtgttccgcgacatggagaagcccgagcccatggaccggctggtctgcggcgac
gtgggcttcggcaagaccgaggtcgccctgcgcgccgcgttccgggccgccctggagggc
cgccagaccgccttgctctgcccgaccacggtcctggccgagcagcactaccagaccttc
acccggcgcatggagggttttccggtgcgcgtgggcatgctcagccggttcgtctcgccc
aagcaccagaagaccgtgctggaggcggccgcgcgcggcgaaatcgacatcctcatcggc
acgcaccgcatcctgtccaaggacgtggaactgcccaacctcgggctgctcatcctggac
gaggagcagcggttcggcgtcaagcacaaggaaaagctcaaacatttcaggcagaatatc
gacgtcctgaccctcacggccacgcccatcccccggaccctgcaactctccctgtccggc
attcgcgggctgtccgtcatcgagaccccgcccgtggaccgcaagcccgtggagaccgcc
atcatggagcgcgaggacctggagctgaaggcggtcctgcgccgcgagctggaccggggc
ggccaggtgtactgggtgtacaaccgggtcaacgggctggcccgcgtggcggactacgtc
aaggggctggtcccggacgccaaggtgggcatggcccacggccagatgggcgagaagggg
ctggaagaggccatgcgcgacttctggcacggcgagctggacgtgctcgtgtgcacctcc
atcgtggaatccggcctggattttcccaacgccaacacgctcatcgtggaccaggcccag
ctcttcggcctgggacagctgtaccagctccggggccgggtggggcgcagcgagcgccag
gcctatgcctatttcgtggtcccgtccgtcagggatatttccgaaatcgtgcgcaaacgc
ttgcgaatcattctggacatggattatctgggggcaggtttcaaggtggccatggaggat
ctgcggctgcgcggcgcgggcaacatcctgggcgaggcccagtctggccagatcgccaag
gtcggcctcgaactcttcctggaaatgctggaggaggaggtcgcccggattcggggcgag
gagcacgcgagggtctcggacccggaattgaatttcgtgttcgaggcgcatatccccggc
ggctacatcccggattcgagggagcggctgcgctattaccgggcgctgtcctcggcctcc
tcggacatggagctcagggaatacgaggccgagatccgcgaccggttcggcccgctgccg
gacgagctggacgccttcttcggcgtgctcaagctcaagcggaccctgtcccggctccag
gccgccagggccgagctgtatcccggcagggccgtgatcacctggaaggaaaacgccatc
gcggccagcccggaaaggctcatcggctgggtcggcgaacggtccgagacgaccaggctc
ctgcctccggccaagctggagatccgctacggcgacgcgccgtccatgcgcgaggccctg
gaaaccaccgcggccgacctggaagggctgctcgacggggaaaagcaacaaggcaagtaa
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