Pseudodesulfovibrio indicus: AWY79_14715
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Entry
AWY79_14715 CDS
T04404
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dej
Pseudodesulfovibrio indicus
Pathway
dej03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dej00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AWY79_14715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dej03021
]
AWY79_14715
03400 DNA repair and recombination proteins [BR:
dej03400
]
AWY79_14715
Enzymes [BR:
dej01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AWY79_14715
Transcription machinery [BR:
dej03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AWY79_14715
DNA repair and recombination proteins [BR:
dej03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AWY79_14715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
AMK12274
UniProt:
A0A126QQP8
LinkDB
All DBs
Position
complement(3222473..3226627)
Genome browser
AA seq
1384 aa
AA seq
DB search
MTLDDLFTLRGAPNAAAQGRNLKAIQISIAAPETIREWSYGEVKKPETINYRTFKPERDG
LFCAKIFGPVKDYECNCGKYKRMKHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIW
FLKTLPSKIGTLLDITMADLEKVLYFDSFIVLDPGETPLKKHQVVSEDQYFQVIDHFGES
ALTVGMGAETVRTMLQALDLPTLRAELREESQTTRSQTKKKKITKRLKIVEAFLESGNKP
EWMIMEVIPIIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPEIIIRN
EKRMLQEAVDALFDNGRRGRAITGTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSV
IVVGPKLKLHQCGLPKKMALELFKPFIYSELEKREIATTIKSAKKMVEREDLVVWDILED
VVREYPIMLNRAPTLHRLGIQAFEPLLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLSV
EAQIECRVLMMSSNNILSPSNGSPIINPSQDIVLGLYYLTTPRSFEKGEGMIFSSPEEVI
AAHDFGAVGIHARIKVRINGEIVETTTGRIIVSELIPEKVPFELVNCVLNKKNIAALVTG
AYRLAGTKATVILCDRIKDLGYEYATRAGVTIGVKDLKIPDKKAKMLETANAEVDEIENQ
FQDGIITRTEKYNKVVDVWTKVTNDISNEMMQEMSTDVLVDPKTGNTEVNSSFNPIYMMA
TSGARGNQDQMRQLAGMRGLMAKPSGEIIETPITASFREGLSVLQYFISTHGARKGLADT
ALKTANSGYLTRRLVDVVQDVTVSELDCGTVDGLELTHYIKGGEIKQRLAERVLGRVTMF
DTYDEETGKLVIPSNTMIDAAYAKKLDESGVNSIVIRSGLTCKSKQGVCAMCYGRDLARG
HLVNVGETVGIIAAQSIGEPGTQLTMRTFHIGGTASKEIESSSIESQHNGRVITSRMRTV
VNSDGHKMVLGKSCQVGIVDEQGREREKYVLPSGARLLVDEGQEVKKGAALAEWDPYMEP
FIVDVSGVIKFKDIIEGKTVQEDRTSKASFTIMEYRTTNYRPAVTLLGEGGKPVHRPGTD
IDANFAMPVGAILMVKDGDTVRAGDVIARKPRESSKTKDIVGGLPRVAELFEVRKPKDLG
VVSSIDGIVTFGPETKGKRKVIVTPETGDAQEFLIPKGKHITVQESDFVEAGDLLTEGSP
ELHDILRIKGEKHLARYLVEEIQDVYRFQGVNINDKHIEIIVRQMLKKVSILNPGSTSFL
IGEQVDKMRFMEENSKVVAEGGEPAVAETLVLGITQASLSTDSFISAASFQETTKVLTEA
SLKGKSDYLRGLKENVIVGRLVPAGTGFRKYTDAEISVPDQPERPDKFLEELEESPLLVD
MPLA
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atgacgttggacgatctgttcaccttgcgtggagcgccgaacgcggcggcccagggccgc
aacctcaaagcgatccagatatccatcgctgcgcctgaaacgatccgcgagtggtcctac
ggtgaagtcaagaagccggagaccatcaactaccgtaccttcaagccggagcgcgacggc
ctgttctgcgccaagatcttcggcccggtgaaggactacgagtgcaactgcggcaagtac
aagcgcatgaagcatcgcggcatcgtctgcgaaaagtgcggcgtcgaggtcattgcctcc
aaggttcgccgcgagcgtatgggacacatcgaactggccgcgcctgtggcgcacatctgg
ttcctgaagaccctgccgtccaagatcggcacgctgctcgacatcaccatggccgacctg
gaaaaggtcctgtacttcgactcgttcatcgtgcttgatccgggcgagaccccgctgaag
aagcaccaggtcgtcagcgaggaccagtacttccaggtcatcgaccacttcggcgagtcc
gccctgaccgtgggcatgggcgcggagaccgtccgcaccatgctccaggccctggacctg
ccgaccctgcgcgccgagctgcgcgaagagtcgcagaccacccggtcgcagaccaagaag
aagaaaatcaccaagcggctgaagatcgtcgaggccttcctcgagtccggcaacaagccc
gagtggatgatcatggaagtgattcccatcatcccgcccgagctgcgcccgctggtcccc
ctggacggcggccgtttcgccacctcggacctcaacgacctgtaccgccgcgtcatcaac
cggaacaaccgcctcaagcggctgctggagctcggcgcgcccgagatcatcatccgcaac
gagaagcgcatgctccaggaggccgtcgacgccctgttcgacaacggccgccgcggccgc
gccatcaccggcaccaacggtcgtccgctgaagtccctgtccgacatgatcaagggcaag
cagggccggttccgccagaacctgctcggcaagcgcgtcgactactccggccgttcggtc
atcgtcgtcggcccgaagctgaagctgcaccagtgcggcctgcccaagaagatggcgctg
gaactgttcaagccgttcatctattccgagcttgagaagcgcgagatcgccaccaccatc
aaatccgcgaagaagatggtcgagcgcgaggacctggtcgtctgggatatcctggaagac
gtggtccgcgagtacccgatcatgctcaaccgcgccccgaccctgcaccggctgggcatc
caggccttcgagccgctgcttgtcgagggcaaggccatccagctgcacccgctcgtctgt
tccgcctacaacgcggacttcgacggtgaccagatggccgttcacgttccgctgtccgtc
gaggcgcagatcgagtgccgcgtgctgatgatgtcctccaacaacatcctcagcccgtcc
aacggctcgccgatcatcaacccctcgcaggacatcgtcctgggcctgtactacctgacc
acgccgcgttccttcgagaagggcgagggcatgatcttctcctccccggaagaggtcatc
gccgcccacgacttcggcgccgtcggcatccacgcccggatcaaggtgcgcatcaacggc
gagatcgtcgagaccaccaccggccggatcatcgtttccgagctgatccccgagaaggtc
ccgttcgagctggtcaactgcgtgctgaacaagaagaacatcgccgccctggtcaccggc
gcctaccgtctggcgggcaccaaggccaccgtcatcctgtgcgacaggatcaaggacctg
ggttacgaatatgccacccgcgctggtgtgaccatcggcgtcaaggacctcaagatcccg
gacaagaaggcgaagatgctggaaacggccaacgccgaggtggacgagatcgagaaccag
ttccaggacggcatcatcacccgcaccgagaaatacaataaggtcgtcgacgtctggacc
aaggtgaccaacgacatctccaatgaaatgatgcaggagatgtccaccgacgtcctggtc
gatcccaagaccggcaacaccgaggtcaactcgagcttcaaccccatctacatgatggcc
acctccggcgctcgaggcaaccaggaccagatgcggcagctggccggcatgcgcggtctg
atggccaagccttcgggcgagatcatcgagaccccgatcaccgcctccttccgcgaaggg
ttgtcggttctccagtacttcatctccacccacggcgcacgaaagggcctggccgatacc
gcgctcaagaccgcgaactccggttacctgacccgccgcctcgtggacgttgtccaggac
gtgaccgtgtccgaactggactgcggcaccgtggacggactggagctgacccactacatc
aagggcggcgagatcaagcagcgccttgcggaacgggttctgggccgcgtgaccatgttc
gacacctacgacgaggagaccggcaagctggtcatcccgtccaacaccatgatcgatgcc
gcctacgccaagaagctcgacgagtccggcgtgaactccatcgtcatccgctccggcctg
acctgcaaatccaagcagggcgtctgcgccatgtgctacggtcgcgacctggcccgtggc
cacctggtcaacgtcggtgagaccgtcggcatcatcgccgcccagtccatcggcgagccg
ggcacccagctgaccatgcgtaccttccacatcggcggtaccgcatccaaggaaatcgag
tcctcgagcatcgagtcgcagcacaacggccgcgtcatcacctcgcgcatgcgcaccgtc
gtcaactccgacggccacaagatggtgctcggcaagagctgccaggtgggcatcgtggac
gagcagggccgcgagcgtgaaaagtacgtgctgccttccggcgcgcgcctgctggtcgac
gagggccaggaggtcaagaagggcgccgccctggccgaatgggacccgtacatggagccg
ttcatcgtcgacgtgtccggcgtcatcaagttcaaggacatcatcgaagggaagaccgtc
caggaggaccgtacctccaaggcgtccttcaccatcatggaataccgcaccaccaactac
cgcccggccgtgaccctgctgggcgagggcggcaagcccgtgcaccggcccggcaccgat
atcgatgccaacttcgccatgcccgtgggcgccatcctcatggtcaaggacggcgacacg
gtccgcgcgggtgacgttatcgcccgtaagccgcgtgagtcctccaagaccaaggacatc
gtcggtggtctgccgcgcgtcgccgagctgttcgaggtgcgcaagcccaaggatctgggc
gtcgtgtcctccatcgacggcatcgtgaccttcggccccgaaaccaagggcaagcgcaag
gtcatcgtcaccccggagaccggcgatgctcaggaattcctcattcccaagggtaagcac
atcacggtccaggagtccgacttcgtcgaggccggcgacctgctgaccgaaggctccccg
gagctgcacgacatcctgcggatcaagggcgagaagcatctggcccgctacctggtcgag
gaaatccaggacgtgtaccggttccagggcgtcaacatcaacgacaagcacatcgagatc
atcgttcgccagatgctcaagaaggtctccatcctgaatcccggctccacctccttcctc
atcggagagcaggtggacaagatgcggttcatggaagagaactccaaggtcgtggccgaa
ggcggcgaacccgccgtggccgaaaccctggttctgggtatcacccaggcctcgctgtcc
acggactccttcatctcggccgcttcgttccaggagaccaccaaggtcctgaccgaagcg
tccctgaagggcaagtccgactacctgcgcggcctgaaggaaaacgtcatcgtgggccgt
ttggtgcccgccggtaccggcttccggaagtacacggacgccgaaatcagcgtgcccgat
cagcccgaacgcccggacaagttccttgaggagctggaagaaagcccgctcctcgtggac
atgcccctggcataa
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