Pseudodesulfovibrio indicus: AWY79_14960
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Entry
AWY79_14960 CDS
T04404
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
dej
Pseudodesulfovibrio indicus
Pathway
dej03410
Base excision repair
dej03430
Mismatch repair
dej03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dej00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AWY79_14960
03430 Mismatch repair
AWY79_14960
03440 Homologous recombination
AWY79_14960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dej03400
]
AWY79_14960
DNA repair and recombination proteins [BR:
dej03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AWY79_14960
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AWY79_14960
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AWY79_14960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
DUF7739
Motif
Other DBs
NCBI-ProteinID:
AMK12313
UniProt:
A0A126QQE4
LinkDB
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Position
complement(3269303..3271012)
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AA seq
569 aa
AA seq
DB search
MPCIWKHRGEGAAPPASATAMAEELEVSPLIVEILWNRGLTDVADMDRFLSPLLRHMANP
AEIPGLTEAAETLARGLAEGRKLAVWGDYDVDGITATAVVKEFFAMRGIEVMHHLPNRME
EGYGMNVPWVERLHEQGADMLLTVDCGISDLEPVARARELGMVVVVSDHHLPGETLPSAH
AVCDPRLKDGGPCDDLAGVGVAFMLMVALNRLLPGDPVDVRPLLDLVALGTIADIVRLTG
QNRILVKNGLLLIKEAKRPGMAALKVVSDYERQAELGAGQIGFHLAPRINAAGRMGDPEK
ALRLLLSKDFDSAMPIAEELNAINMERRRQEQEIADEAFAQAEAMRSQAGLVLHADHWHP
GIIGIVASRVVEKYYRPTLLLCAAESSGLLKGSGRSIPEFNLHEGLVSLAELFEGFGGHA
QAAGVSLKPGNLGEFRERFNAKVIEALGPKPLTPTLKLDHELPFSSIDNTLLKELELLQP
YGMGNPEPVFATRPVRVAEHALFGREREHVKLVLEDQETGTKLPGKAWRMADTLTSVVRG
RTMRFAFTPKIDRYMGIPKIDLRIKDWIF
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
ttgccctgcatttggaaacaccgcggcgagggagccgcgcccccggcttcggccacggcc
atggccgaagagcttgaggtttcgcccctgatcgtcgagatcctctggaaccgtggactg
acggacgtggccgacatggaccgcttcctgagtccgctgctccggcacatggccaacccc
gccgagattcccggcctgaccgaggccgccgagaccctggcgcgggggctggccgaggga
cgcaaactcgccgtgtggggcgactacgacgtggacggcatcaccgccacggcggtggtc
aaggagttcttcgccatgcgcgggatcgaggtcatgcaccatctgcccaaccgcatggag
gagggctacggcatgaacgtgccgtgggtggagcgcctgcacgagcagggcgcggacatg
ctcctgaccgtggactgcggcatctccgacctggagcccgtggcccgcgcccgcgagctg
ggcatggtcgttgtcgtctcggaccaccatctgccgggagagaccctgccgagcgcgcac
gccgtgtgcgatccgcgcctgaaggacggcggcccgtgcgacgacctggccggggtgggc
gtggcgttcatgctcatggtcgccctgaaccggctgctgccgggcgatcccgtggacgtc
cgtccgctgcttgacctggtggcgctggggaccatcgccgacatcgtccggctgacgggc
cagaaccgcatcctggtcaagaacgggctgctgctcatcaaggaggccaagcggcccggc
atggcggccctcaaggtggtcagcgattacgagcgccaggccgaactgggcgcggggcag
atcggctttcacctggcgccgaggatcaacgccgccggacgcatgggcgacccggaaaag
gccctccggttgctgctctccaaggatttcgactcggccatgcccatcgccgaggaactc
aacgccatcaacatggagcgccgccgccaggagcaggagatcgcggacgaggcgtttgcc
caggccgaggccatgcgctcacaggccgggctggtgctccacgccgatcactggcacccg
ggcatcatcggcatcgtggcctcgcgggtggtggagaaatattaccggcccacgctgctg
ctctgcgcggcggagtcctcgggactgctcaaggggtccgggcggagcatcccggagttc
aacctccacgaggggctggtctcgctggccgagctgttcgaagggttcggcggccacgcc
caggcggcgggcgtctccctcaagcccgggaacctgggcgagttccgcgagcggttcaac
gccaaggtcatcgaggccctcggccccaagccgttgacaccgaccctcaagctcgaccac
gagctgccgttctcttccatcgacaacaccctgctcaaggagctggaactgctccagccc
tacggcatgggcaacccggagccggtctttgcaacccgcccggtgcgcgtggccgagcac
gccctgttcgggcgcgagcgggagcacgtcaagctggtgctggaggaccaggagaccggc
accaagctgccgggcaaggcgtggcgcatggccgacaccctgacctccgtggtccggggc
cgaaccatgcggttcgccttcacccccaagatcgaccgctacatgggcatccccaaaatc
gatctgcgcatcaaagactggatattctag
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