Desulfoluna limicola: DSLASN_04090
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Entry
DSLASN_04090 CDS
T07859
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
dek
Desulfoluna limicola
Pathway
dek03410
Base excision repair
dek03430
Mismatch repair
dek03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dek00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DSLASN_04090 (recJ)
03430 Mismatch repair
DSLASN_04090 (recJ)
03440 Homologous recombination
DSLASN_04090 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dek03400
]
DSLASN_04090 (recJ)
DNA repair and recombination proteins [BR:
dek03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
DSLASN_04090 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
DSLASN_04090 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DSLASN_04090 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
BCS94777
UniProt:
A0ABN6F0B5
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All DBs
Position
complement(438758..440479)
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AA seq
573 aa
AA seq
DB search
MQASWTTTEVDESRAKTLEAPLGISPVTAAILTARGHDTPEAARAFLTPTLAGLRSPERL
FGMDVAVDRLARAITDGEMIFICGDYDADGITSTALLITFLQSAGARVACHLPHRVSDGY
GFHPSQVKEHAQPAGARVIITVDCGSTSFEAVEEARACGIDVIITDHHTTGASLPDALAI
INPKQPDCDSGMNDLAGVGVAFYLAVALRTRLREIGHWKTGAEPNLKALCDIVALGTIAD
IVPLTRENRILTRAGLDMINRGPRPGIASLLTASKANKENVDAEDIAFRLAPRINAAGRM
DHAQVGLDLMLAPSQVQATPIAKELCRLNTHRQTTEARIFEEIATYINESPALLDRKSLV
LAKNGWHPGVLGIVASRVVREYGKPAFVISVDENGVGKGSGRSIPGVDLYTALSASADTL
MRFGGHRQAAGLQVMGSRIVDFHRSLESHLTETTSEQDYITAIVADARLPLSAITPALID
ELETLAPFGEGNREPLFIAEDIQVLSTTEVGRNHRRYILAATGNTYLDKCMAIRFNHPGG
PPEKRIAKLLYSLRWNRWNGGKSPQLLIHDMEI
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcaagttggaccaccaccgaagttgacgaatcccgggccaaaaccctggaagcc
ccccttggcatctcccctgtgacggcagccattctgaccgcacggggccatgacacgccg
gaggcggcacgcgcattcctcacgcccaccctggccgggcttcgctcccctgagcgactt
ttcggcatggatgtggccgtggaccggcttgcccgggccatcaccgatggcgagatgatc
ttcatctgcggcgactacgatgccgacggcatcacctccacggcgcttctcatcactttt
ttacagagtgcaggcgcccgtgtggcctgccacctcccccaccgggtctcggacgggtac
ggatttcatcccagccaggtcaaagagcatgcccagcccgccggggcccgcgtcatcatc
accgtggactgcggttccacctcctttgaggccgttgaagaagcacgggcctgcggcatc
gatgtcatcatcaccgaccaccacaccacaggagcctccctgccggacgctctggccatc
atcaatcccaagcagccggactgcgattccgggatgaatgatctcgccggagtgggcgtt
gccttttaccttgctgtggcccttcgcacacggcttcgggagatcggtcactggaaaacg
ggagcggagcccaacctgaaagccctgtgcgacatcgtggccctgggaaccattgccgat
atcgttcccctcacacgggaaaaccgcatcctcacccgcgccggtctcgacatgatcaac
agaggccctcgccccggcatcgcctcgcttctcaccgcctccaaagcaaacaaagagaat
gtggacgccgaagacatcgccttccgcctggccccccggatcaacgccgcaggccgcatg
gaccacgcacaggtgggactcgacctgatgctggcccccagccaggtacaggccaccccc
atcgccaaagagctctgccgcctgaacacccacaggcagactaccgaggcccggattttc
gaggaaattgccacctacatcaacgagagccccgcccttctcgaccggaaatcccttgtt
ctggccaaaaacggatggcacccgggcgtcctgggaatcgtcgcttcccgggtggtgcgg
gagtacggcaaacccgcctttgtgatctccgttgacgaaaacggggtgggcaaaggctcc
gggcgcagcatccccggcgtggatctctacacggctctatctgcctcggcggacaccctt
atgcgcttcggcgggcaccgccaggccgccgggcttcaggtgatggggagccgcatcgtt
gatttccacagaagcctggagtcacacctgacggagaccacctcggagcaagactacata
acggccatcgttgccgatgcccgcctccccctgtcggccatcacaccggccctcatcgac
gagttggagaccctggccccctttggcgaggggaaccgggaacccctgttcatcgccgag
gacattcaggtactctcgaccaccgaggtggggcgaaatcaccgacgatacatccttgcc
gccaccgggaacacatacctggataaatgcatggccattcggttcaatcaccctggcggc
cccccggaaaagcgcatcgcaaagcttctctactcccttcgctggaaccgatggaacggc
ggcaagagcccccaactcctcatccacgacatggaaatataa
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