Desulfoluna limicola: DSLASN_04580
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Entry
DSLASN_04580 CDS
T07859
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dek
Desulfoluna limicola
Brite
KEGG Orthology (KO) [BR:
dek00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dek03016
]
DSLASN_04580
Enzymes [BR:
dek01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DSLASN_04580
Transfer RNA biogenesis [BR:
dek03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DSLASN_04580
Prokaryotic type
tRNA splicing ligases
DSLASN_04580
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BCS94826
UniProt:
A0ABM7PC87
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All DBs
Position
complement(507120..508304)
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AA seq
394 aa
AA seq
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MSREHPHAKEPLPIKSWCTDLDEGALRQAENLQRHPVLVHHVALMPDCHLGYGMPIGGVI
AAENAIIPNAVGVDIGCGMVALQTDLPCDTLAREELRLLLTRVKERVPLGFSRHKKEQTW
KGFSHGRPRFLKEGAWKTARESLGSLGGGNHFIEIQKGDDGFLWLMIHSGSRNLGKTIAD
HHHRTALAWCHKHGVALPDDDLAFLPTDTTEGKAYIDDMRFALAYAMENRKRIMTAFADT
LMGIRPFSQRRQVNIHHNYAALETHFGKEVWTHRKGATSAKKGEAGIIPGSMGAASYIVE
GLGNPESFRSCSHGAGRAMGRNQASRVLTQETCDAAMGDVVFDRWHTIRRGKLKGRPDLG
EAPQAYKAIEAVMDAQADLTKPIVRLSPIGVVKG
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgggaacacccccacgcaaaagagcccctccccatcaagtcctggtgcaccgac
cttgatgagggagcccttcgccaggcggaaaacctgcagcgccaccctgtccttgtccat
catgtggctctgatgcccgactgccacctgggatacggcatgcccatcgggggcgtcatc
gccgcagagaacgccatcatccccaatgccgtgggggtggacatcggctgcggcatggtg
gcccttcagaccgacctgccctgcgacacccttgcccgggaagagcttcgcctgctcctc
acccgagtcaaagagagggttcccctggggttctcccgccacaaaaaagagcagacatgg
aaagggttttcccacgggcggccccgatttctgaaagagggtgcctggaaaacagcccgg
gagagcctggggtccttagggggcggcaaccatttcatcgaaatccagaaaggggatgac
ggctttctctggctcatgatccactccgggtcccgcaacctgggaaaaaccatcgcggac
caccaccaccgaacagcccttgcctggtgccacaagcatggtgtggcccttcccgacgac
gaccttgcctttctccccaccgacacaacggagggaaaggcctacattgacgacatgcgc
tttgccctggcctatgccatggaaaaccgaaaacgcatcatgacggcctttgcagacacc
ctcatgggcatccgccccttcagccagcgacggcaggtcaacattcaccacaactacgca
gcccttgaaacccacttcggcaaagaggtgtggacccacagaaagggagccacctccgcg
aaaaaaggcgaagcgggcatcatccccggttccatgggagccgcctcctatattgtggaa
ggcctcggcaacccggagagctttcgttcctgttcccacggtgccggtcgcgccatgggc
cgcaaccaggcatcccgcgtcctcacgcaggagacctgtgacgccgccatgggagatgtg
gtctttgaccgctggcacaccattcgccgcggcaaactcaaagggcgccccgacctcggt
gaagcaccccaagcctacaaagccattgaggcagtcatggacgctcaggcagacctgacc
aagcccattgtccgcctctcccccataggggttgtcaaaggataa
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