Desulfoluna limicola: DSLASN_06590
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Entry
DSLASN_06590 CDS
T07859
Symbol
rhlE_1
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dek
Desulfoluna limicola
Pathway
dek03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dek00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSLASN_06590 (rhlE_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dek03019
]
DSLASN_06590 (rhlE_1)
Enzymes [BR:
dek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DSLASN_06590 (rhlE_1)
Messenger RNA biogenesis [BR:
dek03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DSLASN_06590 (rhlE_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_25
Motif
Other DBs
NCBI-ProteinID:
BCS95027
UniProt:
A0ABM7PBU8
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All DBs
Position
750302..751543
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AA seq
413 aa
AA seq
DB search
MSFSSLGLFAPLCRAIDDEGYSAPFPIQAEAIPAVLAGRDVMAAAQTGTGKTASYTLPML
QCLSTGPMVRANHIRGLVLTPTRELAVQVSVDVAKYGRHLSLTSGVVYGGVKINPQMMKL
RRGADVLVATPGRLLDLFNKNAVKFSQVEFLVLDEADRMLDMGFIKDIQKIMALLPKRRQ
NLLFSATFSEEIRALAVTFLENPVQIETNPQNSAADSVRQWAYEVDKGKKGELLSHLVRS
NEWEQVLVFTRTKKGADRLVRSLGDDGVSAAAIHGDKSQGQRNRALADFKASKVRVLVAT
DVAARGLDISELPHVINFDLPKVAENYIHRIGRTGRAGLQGEGISLVSADEVQLLAAIEG
LIRLTLPREVDPNFVPAFKVPLTRQVKPKKPKKPKKPKGERGQKPKNKPPAAR
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgtcattttcttcccttggactctttgcccccttgtgtcgtgccatcgatgatgagggg
tattccgctccttttcccattcaggccgaggcgatccctgctgttcttgccggcagggat
gtcatggccgcagcgcaaaccggaactggcaagaccgccagctatacgttgccgatgttg
cagtgcctttccaccggtcccatggtgagggcgaaccacatccgcggcctggtgctgacg
ccgacccgtgagttggccgtgcaggtgtccgtggatgttgccaagtatggcaggcacctt
tcgcttacctcaggtgttgtctacggtggggtgaagatcaatccgcagatgatgaaattg
cgcaggggggccgatgtgctggtggcgacaccggggcggttgctcgacctgtttaataaa
aatgcggtgaagttctctcaggtggagtttttggttcttgatgaagcggaccggatgctc
gacatggggtttatcaaggacattcaaaagatcatggcgctgctcccgaaaagacggcaa
aacctgcttttttcggccaccttctcggaagaaattcgcgctctcgccgtgacttttctg
gaaaatccggtgcagatagagacgaaccctcaaaattccgctgcggacagcgtgaggcag
tgggcctatgaggtggacaagggcaagaagggggaacttctcagccatttggttcggtcc
aacgaatgggaacaggtgcttgtctttacccgcaccaaaaagggcgccgatcgcctggtc
cggagtttgggtgacgacggggtctctgctgcggctatccacggagacaaaagccagggg
cagcggaaccgggctctggcggattttaaagcgagcaaggtccgggttctggttgccacg
gatgttgccgcacgcggccttgatatcagtgagctgccccacgtgatcaactttgacctg
cccaaggtggctgagaattacattcaccgcatcggtcgcaccggccgtgccggcttgcaa
ggggaggggatctccctggtcagcgccgatgaggttcaactgttggctgccatcgagggg
ttgatccgcctgactctgccacgtgaggttgaccccaattttgttccggcctttaaggtt
cccctgacccgccaggtgaagccgaaaaagcctaagaaacccaagaaacccaagggggaa
cgggggcaaaaaccaaaaaacaagcctccggcggcaaggtga
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