Desulfoluna limicola: DSLASN_23470
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Entry
DSLASN_23470 CDS
T07859
Symbol
rhlE_2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dek
Desulfoluna limicola
Pathway
dek03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dek00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSLASN_23470 (rhlE_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dek03019
]
DSLASN_23470 (rhlE_2)
Enzymes [BR:
dek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DSLASN_23470 (rhlE_2)
Messenger RNA biogenesis [BR:
dek03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DSLASN_23470 (rhlE_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BCS96715
UniProt:
A0ABM7PHU9
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All DBs
Position
2961806..2963233
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AA seq
475 aa
AA seq
DB search
MSFDQLGLRAELLKAVETKGYTTPTPIQSKAIPVILDGRDIFARAQTGTGKTDAFGLPLV
EILSRGKSNGRHPRALVLTPTRELALQVGESIKALARRVSLRCTVVHGGVRIQPQIDRLK
RGVDILVATPGRLLDLASLRHLNLLQIEFVVFDEADRMLDLGFNEEITEVINLMPYERRT
MLFSATYTQEIRDLAAKMLRDPEHIEVTPKKTAAESVIQKVHLVEKTNKRPLLVHLITSG
RWSRVLVFCRTKHGANKLTDKLTDHGISAAALHGNKSQSLRTRTLEEFKRGEIRILVATD
VAARGLDISNLPFVVNYDMPSIPEDYVHRIGRTGRAGVSGIAVSLVSAEEKRFLDAIEAL
LKHKIPVEKVDGYTQGHDVPDFVLFRPGSTGGGKKVDKELQEIVEQRKESKQKSNTRKGK
SKSSGKGPKAASKAGAKPGSKPRAGKKTGDAGKKPSRPASRSSQPSRPGKPRGRR
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcgatcaacttggccttcgggccgaacttctgaaagctgttgagaccaagggg
tacaccacccccacccccattcagagcaaggccatccccgtcatcctcgacggccgggac
atctttgcccgcgcccagaccggaacgggtaaaaccgatgccttcgggctccccctggtt
gaaatcctgagccggggcaaaagcaacggacgtcacccccgcgccctggtcctgaccccc
actcgtgagctggcgctccaggtgggcgagagcataaaagcccttgcaaggcgagtctcc
ctgcggtgcaccgtggttcacggcggggttcgaatccagccccagatcgatcgcctcaag
cgtggtgtcgatatcctggtggccacgccggggcgccttctggacctcgcctccctgagg
cacctgaacctgcttcagattgagtttgtggtgttcgacgaggcagaccgaatgctggac
ctgggcttcaatgaggagatcaccgaggtgatcaacctcatgccctatgaacgacggaca
atgctcttttccgccacttacacccaggagatccgggatcttgccgcaaaaatgctgagg
gacccggagcatatcgaggtgacgcccaaaaagacggcggcagaatcggtgattcagaag
gtgcaccttgtggaaaagaccaacaagcgcccgcttctcgtccacctgatcaccagcggg
cgctggtcccgggtgctggtcttttgccgcacaaaacacggggccaacaagctcactgac
aagctgaccgatcatgggatcagtgccgcggccctgcacggcaacaaaagccagtccctg
cggacgcgcaccctggaagagttcaaaagaggggaaatccgcatcctcgtggcaacggac
gttgcagcaaggggcctggacatcagcaacctccccttcgtagtcaactacgacatgccc
tccatccccgaggattacgtgcaccgcatcggccgtaccggcagggctggcgtaagcgga
attgccgtctccctggtcagtgccgaagagaaacgattcctggatgccatcgaggctctc
ctgaagcataaaattccggttgaaaaggtggacggctacacgcagggtcacgacgtaccg
gattttgttcttttcaggcccggcagcaccggcggcggaaaaaaagtcgacaaggaactt
caggagatcgtcgaacaaagaaaagaatccaaacagaagtcaaacacccgcaaagggaaa
tccaaaagctcgggcaaaggcccgaaagcagcgagcaaggcaggagccaaaccgggatcg
aaaccccgagcaggtaaaaagacaggtgatgcggggaaaaagccatccagacctgcctct
cgctcatcgcaaccgtccaggccaggcaagcccaggggaagaagataa
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