Desulfoluna limicola: DSLASN_31700
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Entry
DSLASN_31700 CDS
T07859
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
dek
Desulfoluna limicola
Brite
KEGG Orthology (KO) [BR:
dek00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dek03019
]
DSLASN_31700
Enzymes [BR:
dek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DSLASN_31700
Messenger RNA biogenesis [BR:
dek03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DSLASN_31700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
HA2_N
PhoH
AAA_30
T2SSE
AAA_25
NACHT
TsaE
ATPase
ABC_tran
Myosin_head
Motif
Other DBs
NCBI-ProteinID:
BCS97538
LinkDB
All DBs
Position
4010439..4014437
Genome browser
AA seq
1332 aa
AA seq
DB search
MESKAFKKELEKALRSLGRIMIRDRHPLRRDLKNLQRIKEPDEKAVRKLAALKGRLSASM
DERRRRQQTPPALNYNQDLPVTARREEIVETIRKNQVVIISGETGSGKTTQIPKFCVEAG
RGTGGLIAVTQPRRIAAVSVANRLAEEMGEEPGKSVGYKIRFHETGDKGGTIRLMTDGIL
LAEAQGDPFLSSYDTIIVDEAHERSLNIDFILGILRTLVKKRRDLKVIVTSATIDTEKFS
KAFDGAPIIEVSGRTFPVETIHRPLDSKDDSYVDAAVQALDDLVALGPYGDILIFMPTEA
DIKEACDMIEGRRHKAMTVLPLYARLSAADQKRVFQSAYGRKVIVSTNVAETSITIPGIK
YVIDTGIARIPRYSPRTRTTSLPVMEISRSSADQRKGRCGRVENGVCVRLFDEASFHSRP
LFTLPEILRANLAEVILRMLSLRLGRVEKFPFVDPPSPQSIADGFQTLLELGAIHEVKGR
EGEVRHQLTETGRIMAAIPVDPKLARILIEASHNGCMEEVLVIISALTIRDPRERPEGKE
AQADQKHAAFKDPLSDFITVLNIWRRFQEHMGGSRKSGPMKSFCKENYISFLRIREWLDI
HGQLSRIAKEFALPQRCLPPGTQADKPNKKEAFGTEYTAIHKSILAGYLSSIATVKEKNL
YNATKGREVMIFPGSGLFNKGGNWIVASEMVETSRLFARNVARIDSDWLEELGKDLIKRS
HSNPRWEKKMGAVVADEQVTLFGLIVSANKKVLFGPIDPEEATRLFIRSALVEGDLEIPQ
GNRNFSFLAHNRALIDDVREVEDRIRRRDILISEEDLFAFYAEKVTNVWDIRTLTRRIKE
EGGDAHLKMDPAAIARYTPETDELEAFPKGITVGGGTFSLSYAFEPGKEKDGVTLEVPAH
SAQALSKEALDWVVPGLMAEKIEAMIKGLPKEHRKRLVPVSDTVAVISAEMEELKILKQG
AFPTRPLITALGSFIAKRFGVRIPPNAWRGDAVSDHLKVRIAVTGAKGKELAASRDKSVL
LTRTEEALPKDDVFQKLKRTWEKHGLTDWPMDEIPESVPAHGGLFAYPALTAAKDGVALT
LHRHDREALRLHRKGVAALTAMRLAKEVKSLSKDLKLTGNAKKRAAYFNGDVAITEALAG
KTTELLFPSDLRSRTAFEAHLQEASRKLYATGSSLLSAVETILDHYHDTSALIYTEELRR
AKTPAGQLLTGMLRNELDLLVPKNFIALYEPGRLSQLERHIRAIALRAKRAFDAPEKDRA
KAREVAPFVKALNSLVASLNPDSSEEKKEAIEALFWSIEEFKISVYAQEVGTREKVSAKR
LNKQIREIEVMI
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaaaggcgtttaaaaaagagctggaaaaggccttgcgttcccttggccgcatc
atgatcagggaccgccacccattgcggcgcgacttgaaaaatctgcagcgcataaaggag
cccgatgaaaaggcggttcgcaagctggccgccctgaaagggcggctctccgcctccatg
gacgagaggaggcgccgccagcaaacccctcctgccctcaactacaaccaggatctcccc
gtcacagcccgccgtgaagagattgtggagaccatccgaaaaaaccaggtggtgatcatc
tccggggaaaccggctccggcaagaccacccagatcccgaagttctgcgtggaggcgggc
cggggcacgggcggcctcatcgccgtcacccagccccggcgtatcgccgccgtctccgtt
gccaaccggctggccgaagagatgggggaagagccgggcaaaagcgtgggctacaagatc
cggttccatgagaccggagacaaaggcggcaccatccgcctcatgaccgacggcatcctc
ctggccgaagcccaaggggaccccttcctctcctcctacgacaccatcatcgtggatgag
gcccatgagcgaagtttaaacatcgattttatcctcggcatcctgcgcaccctggtgaaa
aaacggcgggacctgaaggtgatcgtcacctcggccaccatcgacaccgaaaagttctcc
aaggcctttgatggcgcccccatcatcgaggtatcggggcgcaccttccccgtggagacg
atccaccggcccctggactccaaagacgacagctacgtggatgccgccgtccaggccctg
gacgacctggtggccctgggaccctacggcgatatcctcatcttcatgcccacggaggcc
gacatcaaagaggcgtgtgacatgatcgaggggaggcggcacaaggccatgaccgtgctg
cccctctacgcccgcctctccgccgcagaccagaaacgggtgttccagagtgcctacggc
cgaaaggtgatcgtgtccaccaacgtggcggaaacctccatcaccattcccggcatcaag
tacgtcattgataccggcatcgcccgaatcccccggtactcaccacggacccgaaccacc
agcctgcccgtcatggagatctcccgctccagcgcggaccaacgaaaagggcgctgcggc
cgagtggaaaacggggtctgcgtccgactctttgacgaggcatccttccacagccgcccc
ctcttcaccctgccggagatcttaagggccaacttggctgaagtcatcctgcgcatgctg
tccctccggctcggacgggtggaaaagttcccctttgtggacccgccatccccccaaagc
attgccgacggctttcaaacccttctggagctgggcgccatccatgaagtcaagggccgg
gagggcgaggtccgccaccagctcacggaaaccggccgaatcatggccgccatccctgtg
gacccgaagctggcccgcatcctcatcgaggcctcccacaacggctgcatggaggaggtg
ctggtgatcatctcggccctgaccatccgggatccccgggagcgccccgaaggcaaagag
gcccaggccgaccagaagcacgccgccttcaaagaccccctgtcggattttatcacggtc
ctgaatatctggaggcggtttcaggagcacatggggggatccaggaaatcgggccccatg
aagagcttctgcaaagagaactacatctcctttcttcgcattcgtgaatggcttgatatc
cacggccagctctctcgcatcgcaaaagagtttgcactgccccagcgatgcctccctcct
gggacgcaagctgacaaacccaacaaaaaagaggccttcggcaccgagtacaccgccatc
cacaaatccattctggccggctacctctccagcatcgccaccgtaaaggagaaaaacctc
tacaacgccaccaaagggcgtgaggtcatgatcttccccggatcgggcctcttcaacaaa
ggggggaactggattgtggcctcggaaatggtggagacctcgcggctttttgcacgaaac
gtcgcccgcatcgattcggactggctggaggagttgggaaaagatctgatcaagcgctcc
cactcgaacccccgctgggaaaagaaaatgggcgccgtggtggccgacgaacaggtcacc
ctcttcggcctcatcgtctctgcaaacaaaaaagtgctcttcggccccatcgaccccgaa
gaggccacccgcctcttcatccgcagcgccctggtggaaggggatctcgaaatcccccag
gggaaccggaacttctcctttcttgcccacaaccgggccctcatcgacgacgtgcgtgag
gtggaagaccgtatcaggcgccgagacatcctcatcagcgaggaggacctctttgccttt
tacgccgaaaaagtaacgaacgtctgggacatccgcaccctgacccgccgcatcaaggaa
gaagggggagacgcgcacctgaagatggaccctgcggccatcgcccgctataccccggag
accgatgagcttgaggcctttcccaaggggatcactgtgggcggggggaccttctccctc
tcctacgcctttgaaccgggaaaagagaaagacggcgtcaccctggaggtccccgctcac
tccgcccaggccctctccaaagaggccctggactgggtcgtgcccggcctcatggctgaa
aagatcgaggccatgatcaaggggcttcccaaggaacaccgaaaacgactggtgcccgtc
tccgacaccgtggctgtcatctcggctgagatggaggagcttaaaatcctcaagcagggg
gccttccccacccgtccccttatcactgccctgggatcctttattgccaagcgattcgga
gtacggatccctcccaacgcctggcggggagacgccgtatcagaccacctcaaggtgcgc
atcgccgtcaccggggccaagggcaaagagctggcggcctcacgggacaaatcggttctt
ctcacccgaacggaagaggcgcttcccaaagacgatgtctttcaaaaactcaaacgaaca
tgggaaaagcacggtctcaccgactggcccatggatgaaattccggagagtgtccccgcc
catggcggcctctttgcctaccccgcccttacggcagccaaagatggcgtggccctgacc
cttcaccgccacgatcgtgaagccctccggctccacagaaaaggggtcgccgccttaacg
gccatgcgcctcgccaaagaggtcaaaagcctctccaaggacctcaagctcaccgggaac
gcaaaaaaacgcgccgcctattttaatggggacgtcgccatcaccgaggccctggcgggc
aaaaccaccgaactgctcttcccctctgacctgcgcagccgcaccgcctttgaagcccat
ctccaagaggcctcccgaaagctctacgccacgggctcctcgctcctgtctgctgtggag
accatcctggaccactaccatgacaccagcgccctcatttacaccgaggagctgagacgg
gccaaaacgcccgcgggtcagctcttaaccgggatgctgcgcaacgagctggacctcctc
gtgccgaaaaacttcatcgccctctacgagccgggtcgcctgtcccagctcgaacgccat
atccgtgccattgccctgcgcgccaagcgcgcctttgacgcccctgaaaaggaccgcgcc
aaagcacgggaggtcgcccccttcgtaaaggcattgaacagtctcgtcgcctccctcaac
ccggactcgtccgaagagaaaaaagaggccatcgaagccctcttctggtccatcgaggag
ttcaaaatctccgtctacgcccaggaggtcggcacccgtgaaaaggtctcggccaaacgc
ctcaacaaacagatccgggaaatcgaggtgatgatctaa
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