Desulfoluna limicola: DSLASN_38330
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Entry
DSLASN_38330 CDS
T07859
Symbol
nifA
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K02584
Nif-specific regulatory protein
Organism
dek
Desulfoluna limicola
Pathway
dek02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
dek00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
DSLASN_38330 (nifA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dek03000
]
DSLASN_38330 (nifA)
Transcription factors [BR:
dek03000
]
Prokaryotic type
Helix-turn-helix
Other families
DSLASN_38330 (nifA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF
GAF_2
AAA_5
HTH_8
AAA_2
Mg_chelatase
AAA
AAA_3
AAA_7
RsgA_GTPase
GAF_3
Kinesin
bpMoxR
Microtub_bd
APC_N_CC
SLFN-g3_helicase
DSPc
AAA_30
NUDE_C
Motif
Other DBs
NCBI-ProteinID:
BCS98201
LinkDB
All DBs
Position
complement(4870290..4871810)
Genome browser
AA seq
506 aa
AA seq
DB search
MKRLNETRLFFEISKALHEHRDLKNALYNVLNILEEGMDMERGTITLLNPRRNEISIEVA
HGLTKTAMRKGKYKPGEGITGSVFEKGEPVSIPKISEEPLFLDRTASRKHNGLEYSFFCV
PVKKGKTVIGALSVDRPFEEDFPLSQGTEILSVVATMIATHVINLEKINREKEKLKEENT
RLRTELENKYSFTNIIGNSNKMREVYQMISQVCKSNATVLVRGQSGTGKELVANSIHYNS
NRAKHPFIKVNCAALPESLIESELFGHEKGSFTGAVNQKQGKFELAHKGTLFLDEIGSIS
LDVQVKLLRALQEREFERVGGHRTIKSDVRIVAATNNNLERAVEEGVFRGDLYYRLNVFP
IFLPPLKERKTDILLLADHFVEKYAKENDKEIRRISTPGIDMLMSYHWPGNVRELENCIE
RAVLLCNEGVIHGYHLPPTLQTGSESGTLPAKTLEEATANLEREMIIDSLKNTRGNITSS
AEMLGTTVRKFSYKAQKYGIQYKDYR
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcctgaatgaaaccagactcttcttcgaaataagcaaagcccttcacgagcac
cgcgacctcaaaaatgccctgtacaatgtgctgaacatcctcgaagaggggatggatatg
gagcggggcaccatcacgcttttaaacccgcgccgaaacgaaatcagcattgaggtggcc
cacggccttaccaaaaccgccatgcgaaaaggcaagtacaagcctggcgaagggatcacc
ggcagcgtgtttgaaaaaggcgagccggtctctatccctaaaatcagtgaagaacctctc
tttctggatcgcacggcctcacgcaagcacaacgggttggaatactccttcttctgcgtc
ccggtcaaaaaaggcaaaaccgtcatcggcgccttgagcgtggaccgcccctttgaggaa
gatttccccttgagccagggcactgagattctctcggtggtggccaccatgatcgccacc
cacgtgatcaacctggagaagatcaatcgggagaaggagaagcttaaagaggaaaacacc
cgcctccgaacggagctggagaacaaatacagcttcaccaacatcatcggcaactccaac
aaaatgcgtgaagtctaccagatgatctcccaggtctgcaaaagcaacgccacggtcctt
gtaaggggccagagcggcacaggcaaggagttggtggcaaactccatccactacaactcc
aaccgggccaagcaccctttcattaaggtcaactgcgccgccctgcccgagagcctcatt
gaaagcgagcttttcggccatgaaaaagggtcattcacgggtgctgtcaaccagaaacag
gggaagttcgagctggcccacaaggggaccctctttctggacgaaatcggttccatcagc
ctggatgttcaagtgaaattacttcgggcactgcaggagagggagtttgagcgtgttggg
gggcatcgcaccatcaagagcgatgtccgaatcgtcgccgccaccaacaacaatctggag
cgggctgtggaggagggcgtcttccggggcgatctctattaccggctcaatgtctttccc
atttttctgcccccgttgaaggaacgcaaaaccgacatcctcctcctggcagatcatttt
gtggaaaagtacgccaaggaaaacgacaaagagatccgacggatctccacgccggggatc
gacatgctgatgagctaccactggccgggcaacgtccgtgagctggaaaactgcatcgag
cgggcggtcctcctctgcaacgaaggggtgattcacggctaccacctccccccgaccctt
cagacgggttccgagtccggcaccctcccggccaaaaccctggaggaggccacagccaac
ctggagcgggagatgatcattgattccctgaaaaacacccggggcaacatcacctcctct
gcggagatgctgggtaccaccgtgaggaaattctcctacaaggcccagaaatacggcatc
cagtacaaagactaccgataa
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