Delftia sp. Cs1-4: DelCs14_1431
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Entry
DelCs14_1431 CDS
T01497
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
del
Delftia sp. Cs1-4
Pathway
del03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
del00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DelCs14_1431
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
del03019
]
DelCs14_1431
03016 Transfer RNA biogenesis [BR:
del03016
]
DelCs14_1431
Enzymes [BR:
del01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
DelCs14_1431
Messenger RNA biogenesis [BR:
del03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DelCs14_1431
Transfer RNA biogenesis [BR:
del03016
]
Prokaryotic type
tRNA degradation factors
DelCs14_1431
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_2
S1_RRP5
DUF5813
KH_KhpA-B
S1_2
KH-I_KHDC4-BBP
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
AEF88463
LinkDB
All DBs
Position
1616354..1618615
Genome browser
AA seq
753 aa
AA seq
DB search
MSIFNKVTKTFQWGQHTVTMETGEIARQASGAVLVNIDDTVVLATVVASKQAKSGQDFFP
LTVDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTV
SLNPEVDADIAALIATSAALSVSGIPFNGPIGAARVGYINGEYVLNPGQTQRKDSQMDLV
VAGTEAAVLMVESEAQQLPEDVMLGAVVFGHEQGRIAIEAIHELVREAGKPVWDWVAPAK
DEELIAKVAALGDEALRTAYQIRNKQSRTQACREAYAAVKAGLTAQGVEFDGVKVEGMLF
DIEARIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGT
ERDAQRIDALAGEFEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAACLPSK
EEFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVL
TDILGDEDHLGDMDFKVAGTTSGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ
EAMGEAKAEISSFAPKLYTMKINPEKIRDVIGKGGSTIRALTEETGTQIDIGEDGTITIA
SSDAAKADEAKRRIEEITAEVEIGKIYEGPVTKILDFGALVNLLPGKDGLLHISQIAHER
VERVADYLQEGQIIKVKVMETDEKGRVKLSLKALTERPAGMERSERPAPAEREFRQPREP
RQQREFREPREPREPRDGGRPAAEGEQQQQQQQ
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgtccatcttcaacaaagtcaccaagaccttccagtggggccagcacacggtcaccatg
gaaaccggcgagatcgcccgccaggcttccggcgccgtgctggtcaacatcgatgacacc
gtggtgctggccaccgtggtggcgtccaagcaggccaagtccggccaggacttcttcccg
ctgaccgtcgattacatcgagaagacctacgccgcaggcaagatccccggcagcttcttc
aagcgcgaagccaagcccagcgaactcgaaaccctgaccagccgcctgatcgaccgcccg
atccgcccgctgttccccgaaggtttctacaacgacgtgcacgtggtcatccacaccgtg
tcgctgaaccccgaagtcgatgccgacatcgccgccctgatcgccacctcggctgccctg
tccgtgtcgggcattcccttcaatggccccatcggtgctgcccgcgtgggttacatcaat
ggcgagtacgtgctcaaccccggtcagacccagcgcaaggattcgcagatggatctggtt
gtggccggcaccgaagccgccgtgctgatggtggagtccgaagcgcagcaactgcctgaa
gacgtgatgctgggcgccgtggtctttggccacgagcaaggtcgcatcgccatcgaagcc
atccacgagctggtgcgcgaagccggcaagcccgtctgggactgggttgctcccgccaag
gatgaagagctgatcgccaaggtggctgcactgggtgacgaagccctgcgcacggcctac
cagatccgcaacaagcaaagccgcacgcaagcctgccgcgaagcctacgccgccgtgaag
gccggcctgacggcccagggcgtggagttcgacggcgtcaaggtcgaaggcatgctgttc
gacatcgaggcacgcatcgttcgcagccagatcctggccggcgagccgcgcatcgacggc
cgtgacacgcgcaccgtgcgccccatcgaaatccgcaactccgtgctgccccgcacgcac
ggctcggccctgttcacgcgcggcgagacgcaggccctggtcgtgtccacgctgggcacc
gagcgcgacgcgcagcgcatcgacgcgctggctggcgagttcgaggaccgcttcctgttc
cactacaacatgcctccctttgccaccggcgaagtgggccgcatgggctcgaccaagcgc
cgcgaaatcggccacggccgtctggccaagcgcgccctggcggcctgcctgcccagcaag
gaagaattcccctacaccatccgcgtggtgtcggaaatcaccgagtccaacggctcctcg
tccatggcttcggtctgtggcggctgcctgtcgatgatggatgcaggcgttccgatgaag
gcccacgtggccggcatcgccatgggcctgatcaaggaagacaaccgcttcgccgtgctg
accgacatcctgggtgatgaagatcatctgggcgacatggacttcaaggtggccggcacc
accagcggcatcactgcgctgcagatggacatcaagatccagggcatcaccaaggaaatc
atgcaggtcgccctggcccaggccaaggaagcgcgcatgcacatcctgggcaagatgcag
gaagccatgggcgaagccaaggccgagatctcgtccttcgctcccaagctgtacacgatg
aagatcaaccccgagaagatccgtgacgtgatcggcaagggcggctccaccatccgtgca
ctgaccgaagagaccggcacgcagatcgacatcggcgaagacggcaccatcaccatcgcc
tccagcgatgccgccaaggccgatgaagccaagcgccgcatcgaagagatcacggccgaa
gtcgaaatcggcaagatctacgaaggcccggtcaccaagatcctggacttcggtgctctc
gtgaacctgctgcccggcaaggacggtctgctgcacatcagccagattgcccacgagcgc
gtggagcgcgtcgccgactacctgcaggaaggccagatcatcaaggtcaaggtcatggag
accgacgaaaagggtcgtgtcaagctgtcgctgaaggcgctgaccgagcgtcctgccggc
atggagcgcagcgagcgccccgcgcctgccgagcgtgagttccgccagccgcgtgagccc
cgccagcagcgcgagttccgcgagccgcgtgaaccccgcgagccccgtgacggcggccgt
ccggctgccgagggcgagcagcaacagcaacagcagcagtaa
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