Delftia sp. Cs1-4: DelCs14_3831
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Entry
DelCs14_3831 CDS
T01497
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
del
Delftia sp. Cs1-4
Pathway
del03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
del00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DelCs14_3831
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
del03019
]
DelCs14_3831
Enzymes [BR:
del01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DelCs14_3831
Messenger RNA biogenesis [BR:
del03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DelCs14_3831
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
HI1480
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AEF90820
LinkDB
All DBs
Position
4341045..4342841
Genome browser
AA seq
598 aa
AA seq
DB search
MTFEELNLAPAILKAVLEEGYENPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML
HRLSQGQVPRNKFGGKGIRALVLTPTRELAAQVEESVRSYAKYLDINSTVIFGGVGMKPQ
IDRIKKGVDILVATPGRLLDLQQQGFMDLSTVEVLVLDEADRMLDMGFIHDVKKVLALVP
KDKQSLLFSATFSDEIRDLANGLLRNPQSIQVTPSNTTVQRITQVIHPVGRGKKKQVLLH
IINENNWSQVLVFTRTKFGANNVAEFLTKNNISAMALHGNKSQSARTQALAGFKTGELRA
LVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGREGHAVSLVCMDEEGFMM
DIERFTKQEIPVQVLEGFGPEEDEVAEPIAMGRQTIWGGAGKPPSRDVMQAAAKAARQEM
MDRIRTTKATQPDRGGRAGGRGQAPKAGSDEGRSEGNAGGQGRGRNHAGASANNKPRRDR
FDGPGNGSGAAHRPKAAPQNAPRRGPRPDGEGGGGVRRFDDQPPRADAHLGTQLGHARSS
GPRGSAGGGQPDPMRTSVDTMAERGRRGGFNRGGNGGGGGGGFGGGGRGGPSRGGYGR
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgaagaactgaatctggctcccgccattctgaaggccgtgcttgaggagggt
tacgagaacccgactcccatccaggcacaggccatccctgcggtgctcgccggccacgac
ctgctggcaggtgcccagaccggcaccggcaagaccgctgccttcaccctgcccatgctg
caccgcctctcgcaaggccaggtgccgcgcaacaagttcggcggcaagggcatccgcgcc
ctggtgctgacgcccacgcgtgaactcgccgcacaggtcgaggaatcggtgcgcagctac
gccaagtacctggacatcaactccaccgtcatcttcggcggcgtgggcatgaagccccag
atcgaccgcatcaagaagggcgtggacatcctggtcgccacgccgggccgcctgctggat
ctgcagcagcaaggcttcatggacctgtccaccgtcgaagtcctggtgctcgacgaagcc
gaccgcatgctggacatgggcttcatccatgacgtcaagaaggtgctggccctggtgccc
aaggacaagcaaagcctgctgttctcggccaccttcagcgacgagatccgcgacctggcc
aacggcctgctgcgcaacccgcagtccatccaggtcacgcccagcaacaccaccgtgcag
cgcatcacccaggtgatccaccccgtgggccgcggcaagaaaaagcaggtgctgctgcac
atcatcaacgagaacaactggagccaggttctggtgttcacgcgcaccaagttcggcgcc
aacaacgttgccgaattcctgaccaagaacaacatcagcgccatggcgctgcacggcaac
aagagccagagcgcccgcacccaggccctggctggcttcaagaccggcgaactgcgcgcc
ctggtcgccaccgacatcgctgcacgcggcatcgatatcgatgagctgccgcacgtcgtg
aactacgagatccccaacgtgtccgaggactacgtgcaccgcatcggccgcacgggccgt
gccggtcgcgaaggccacgccgtcagcctggtctgcatggacgaagaaggcttcatgatg
gacatcgagcgcttcaccaagcaggaaatccctgtgcaggtgctcgaaggcttcggccct
gaagaggacgaagtggccgaacccatcgccatgggccgccagaccatctggggcggtgcg
ggcaagccgcccagccgtgacgtcatgcaggccgccgccaaggctgcgcgccaggaaatg
atggaccgcatccgcaccaccaaggccacccagcccgaccgtggcggtcgcgcaggtggc
cgtggtcaggcgcccaaggccggctcggacgaaggccgctccgaaggcaacgccggcggc
cagggccgtggccgcaaccacgccggtgcaagcgccaacaacaagccgcgccgcgatcgc
ttcgatggtccgggcaatggctccggcgccgcccaccgtcccaaggcagccccccagaac
gcccccaggcgcggcccgcgccctgacggcgaaggcggcggcggtgtccgtcgcttcgat
gaccaacccccgcgcgctgatgcccacctgggcacgcagctgggccatgcacgcagcagc
ggcccccgtggcagcgcaggtggcggccagcccgatccgatgcgcaccagcgtggacacc
atggccgaacgcggccgccgtggcggcttcaaccgcggcggcaatggcggcggtggtggt
ggcggcttcggcggcggtggccgtggcggcccctcgcgcggcggctacggtcgctga
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