Delftia sp. Cs1-4: DelCs14_3899
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Entry
DelCs14_3899 CDS
T01497
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
del
Delftia sp. Cs1-4
Pathway
del03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
del00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DelCs14_3899
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
del03400
]
DelCs14_3899
Enzymes [BR:
del01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DelCs14_3899
DNA repair and recombination proteins [BR:
del03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DelCs14_3899
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
IstB_IS21
AAA_30
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AEF90886
LinkDB
All DBs
Position
4414854..4418348
Genome browser
AA seq
1164 aa
AA seq
DB search
MELPKLTPGKRFTLPRPVGSADALLLARLGEREKAAGRVTAIVTADASDAQRLIDEMAFF
APGLRCALFPDWETLPYDSFSPHQDLISERLATLWRINQRDKEHGADVVLVPATTALYRL
APPSFLAGYTFEFKSGQKLDEAKLKAQLTLAGYQHVSQVVSHGEYAVRGGLIDLFPMGSL
QPYRVDLFDDEIDSIRTFDPDTQRSLYPVPEVRLLPGREFPMDEDARAKFRQRWRELLEG
DPTRSRIYKDMGQGIATAGIEYYLPLFFDETATVFDYLGADATVVMHGDLEPAFQRFWQD
TKERFRLVQGDPERPALPPEVLFLSADQFYTRAKEHAQLALRPGTEDVADSAIFQKLEDL
SVVRGAEDPLARLQRHIATSAHRILLLAESDGRRESLLDFFRASGVNPPVFDSLAEFQGD
AGEKVGIATAGLMNGFAWVEEGLDFVTETELFATSPTGRRRRRQEQVSDVEALIKDLSEL
KVGDPVVHSDHGIGRYQGLVNMDMGQKNPDGTPAVQEFLHLEYAGNAVLYVPVSQLQLIS
RYTGVSPEDAPLHKLGGTQWEKAKRKAAEQVRDSAAELLNIYARRAARQGHAFRYSPQDY
EQFANDFGFEETADQRAAIHAVIQDMISPQPMDRLVCGDVGFGKTEVALRAAFVAITGGK
QVAFLAPTTLLAEQHYQTLVDRFSKWPIKVAEVSRFRSGKEITAAVKGIADGSVDIVVGT
HKLLSESTQFKNLGLLIIDEEHRFGVRHKEAMKAMRAEVDVLTLTATPIPRTMGMALEGL
RDLSVIATAPQRRLAIKTFVRNEGTGVIREAVLRELKRGGQCYFLHNEVETIENRKQKLE
EILPEARIAVAHGQMPERELERVMRDFVAQRYNILLCSTIIETGIDVPSSNTILISRADK
FGLAQLHQLRGRVGRSHHQAYAYLMVPDLDSLTKQAQQRLEAIQQMEELGSGFYLAMHDL
EIRGAGEVLGENQSGNMMEVGFQLYNEMLSEAVRSLKAGKEPDLLSPLSASTDINLHAPA
LLPNDYCGDVHLRLSFYKKLATARTSDQIDTLLEEIVDRFGKLPPQAQTLIDVHRLRVLS
QPYGVVKVDAAPGVINITFKPQPPVDPMAIIHLIQKNKHIKLAGNEKLRIERALDNPKDR
AQMVRDVLRSLGQPLVEAKAAQPA
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggaactgcccaagctcactcccggaaaacgcttcaccctgccccgccccgtgggcagc
gccgacgccctgctgctggcccgcctgggcgagcgcgagaaggctgcaggccgggtgacg
gccatcgtcacggccgacgcctcggatgcccagcggctgatcgacgagatggccttcttc
gccccgggcctgcgctgcgcgctgttccccgactgggagaccctgccctacgacagcttc
tctccccaccaggacctgatcagcgagcgcctggccacgctgtggcgcatcaaccagcgc
gacaaggagcatggcgccgacgtggtgctggtgcccgccaccacggcgctgtaccggctg
gcgccgccctccttcctggccggctacaccttcgagttcaagagcggccagaagctggat
gaggccaaactcaaggcccagctgaccctggccggctaccagcatgtctcccaggtggtc
agccacggcgagtacgcggtgcgcggcggcctgatcgacctgtttcccatgggctcgctg
cagccctaccgcgtggatctgttcgacgacgagatcgactccatccgcaccttcgacccc
gacacccagcgcagcctctaccccgtgcccgaggtacgcctgctgcccggccgcgagttc
cccatggacgaggacgcacgcgccaagttccgccagcgctggcgcgagctgctggagggc
gatcccacgcgcagccgcatctacaaggacatgggccaaggcattgccacggccggcatc
gagtactacctgccgctgttcttcgacgaaacggccaccgtgttcgactacctgggcgcc
gatgccaccgtggtgatgcatggcgacctggagccggccttccagcgcttttggcaggac
accaaggagcgcttccgcctggtgcagggcgaccccgagcgcccggccctgccgcccgag
gtgctgttcctgtccgccgaccagttctacacgcgcgccaaggagcacgcccagctcgcg
ctgcgcccaggcaccgaggacgtggccgacagcgcaatcttccagaagctggaggacctg
tccgtggtgcgcggcgcggaagacccgctggcgcgcctgcaaaggcacattgccaccagc
gcccaccgcatcctgctgctggccgagtccgatggccggcgcgaaagcctgctggacttc
ttccgcgcctcgggcgtgaacccgccggtcttcgactcgctggccgagttccagggcgat
gcgggcgagaaggtgggcattgccacggccggcctgatgaacggctttgcctgggtggag
gaaggcctggacttcgtcaccgagacggagctgttcgccaccagccccacgggccgcagg
cgccgccgccaggagcaggtcagcgatgtggaggcgctgatcaaggacctgtccgaactc
aaggtgggcgaccccgtggtgcattcggaccacggcatcggccgctaccagggcctggtc
aacatggacatgggccagaagaaccctgacggcacgccggccgtgcaggagttcctgcac
ctggagtacgcgggcaacgccgtgctctacgtgcctgtcagccagttgcagctgatcagc
cgctacacgggcgtctcgcccgaggacgcgccgctgcacaagctcggcggcacgcagtgg
gaaaaggccaagcgcaaggcggccgagcaggtgcgcgactcggcagccgagctgctgaac
atctatgcgcgccgcgccgcacgccagggccatgccttccgctactcgccccaggactac
gagcagttcgccaacgacttcggcttcgaggaaacggcggaccagcgcgccgccatccac
gccgtgatccaggacatgatcagcccccagcccatggaccgcctggtctgcggcgacgtg
ggcttcggcaagaccgaggtggccctgcgcgcggccttcgtggccatcacgggcggcaag
caggtggcctttctcgcgcccaccacgctgctggccgagcagcattaccagaccctggtg
gaccgcttctccaagtggccgatcaaggtggccgaagtctcgcgctttcgctcgggcaag
gagatcacggcggccgtcaagggcattgccgacggctcggtggacatcgtcgtgggcacg
cacaagctgctgtccgagtccacgcagttcaagaacctgggcctgctgatcatcgacgag
gagcaccgcttcggcgtgcgccacaaggaagccatgaaggccatgcgcgccgaggtggac
gtgctcacgctgacggccacgcccatcccgcgcaccatgggcatggcgctggaaggcctg
cgcgacctgtccgtcatcgccaccgcgccacagcggcgcctggccatcaagacctttgtg
cgcaacgagggcacgggcgtgatccgcgaggccgtgctgcgcgagctcaagcgcggcggc
cagtgctacttcctgcacaacgaggtcgagaccatcgagaaccgcaagcaaaagctcgag
gaaatcctgcccgaggcacgcattgccgtggcccacggccagatgccagagcgcgagctc
gaacgcgtgatgcgcgacttcgtggcccagcgctacaacatcctgctgtgctcgaccatc
atcgagaccggcatcgacgtgcccagctccaacaccatcctcatcagccgcgccgacaag
ttcggtctggcccagctgcaccagctgcgcggccgcgtgggccgcagccaccaccaggcc
tatgcctacctgatggtgcccgacctggacagcctgaccaagcaggcgcagcagcggctg
gaggccatccagcagatggaggaactgggctcgggcttctacctggccatgcacgacctg
gagatccgcggcgccggcgaggtgctgggcgagaaccagagcggcaacatgatggaggtg
ggcttccagctctacaacgagatgctgtccgaggcggtgcgcagcctcaaggccggcaag
gagcccgatctgctcagcccgctgtcggcctccaccgacatcaacctgcacgcgccggcc
ctgctgcccaacgactactgcggcgacgtgcacctgcgcctgtccttctacaagaaactg
gccacggcccgcaccagcgaccagatcgacaccctgctcgaagaaatcgtggaccgcttc
ggcaagctgccgccccaggcgcagacgctgatcgacgtgcaccgcctgcgcgtgctgtcc
cagccctacggcgtggtcaaggtggatgcggcgcccggcgtcatcaacatcaccttcaag
ccccagccgcccgtggacccgatggccatcatccacctcatccagaagaacaagcacatc
aagctggccggcaacgagaagctgcgcatcgagcgtgccctggacaaccccaaggaccgt
gcccagatggtgcgcgacgtgctgcgcagcctgggccagccgctggtggaggcgaaggcg
gcccagcccgcatag
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