Delftia sp. Cs1-4: DelCs14_4532
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Entry
DelCs14_4532 CDS
T01497
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
del
Delftia sp. Cs1-4
Pathway
del03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
del00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DelCs14_4532
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
del03019
]
DelCs14_4532
Enzymes [BR:
del01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DelCs14_4532
Messenger RNA biogenesis [BR:
del03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DelCs14_4532
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
AEF91511
LinkDB
All DBs
Position
complement(5111735..5113249)
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AA seq
504 aa
AA seq
DB search
MTSSFSNLQLAESLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLP
LLQRLMRHENTSASPARHPVRALVLLPTRELADQVAQQIAQYAKYTKLRSTVVFGGMDMK
PQTLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSH
LPKTRTTLLFSATFSPEIKRLASSYLQDPVTIEVARPNETASTVEQRFYSVSDDDKRYAL
RSLLKQRDIRQAFVFSNSKLGCARLTRALERDGLRATALHGDKSQDERLKALEAFKRGEV
DLLVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGIAVTLVTNHDARL
VGEIEKLIKKKINVEACPMEDFRGSAPRGHRFDELPRQSSGGYGRERDRGAERGDRGGDA
SRGSSGFGHRGSRMAQRPAHSDPFFDKPYEATASVDASWDSQGAAAPKAGSGIKPKRKLA
ALFKAPVAPVAPVPPVAPVATSEV
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgacaagctctttctccaatctccagctggctgagtccctggcgcgcgccgtagccgac
atgggctatgagtccatgacgcccatccaggcacaggccattccggtcgttctgaccggc
aaggatgtcatgggcgccgcccagaccggcacaggcaagacggcggcgttctcgctgccg
ttgctgcagcggctgatgcgccacgaaaatacctccgcttcgcctgcacgccaccccgtg
cgggcgttggtgcttttgcccacacgcgaactggcggaccaggtggcccagcagatcgcc
cagtatgcgaagtacaccaagctgcgcagcactgtggtgttcggcggcatggacatgaag
ccgcagacgctggagctcaagaaaggcgtcgaggtgctggtggccacgccgggccgtctg
cttgaccacatcgaagccaagaacgccgtgctcaaccaggtcgagtacgtggtgctggac
gaggcggaccgcatgctcgacatcggctttttgcccgatctgcagcgcatcctgtcccac
ctgcccaagacacgcacgactttgctgttcagcgccaccttctcgcccgagatcaagcgc
ctggccagcagctacctgcaggaccccgtcaccatcgaagtggcccgccccaacgagacg
gcgtccacggtggagcagcgcttctacagcgtcagcgacgacgacaagcgctatgcgctg
cgctccctgctcaagcagcgcgacatccgccaggccttcgtcttctccaacagcaagctg
ggctgtgcgcgcctgacgcgtgccctggagcgtgatggcctgcgcgcaacggcgctgcac
ggcgacaagagccaggacgagcgcctgaaggcgcttgaagccttcaagcgcggcgaggtg
gatctgctggtgtgtaccgatgtcgcggcccgtggcctggacatcaaggacgtgccggcc
gtcttcaactacgacgtgcccttcaacgccgaagactatgtgcaccgcatcggccgcacg
ggccgcgcaggcgcctccggcattgccgtgaccctggtgaccaaccacgatgcgcgcctg
gtgggcgagatcgagaagctcatcaagaagaagatcaacgtcgaggcctgccccatggaa
gatttccgtggcagcgcaccgcgtggtcaccgttttgacgagctgccgcgccaaagcagc
ggcggctacggtcgtgaacgggatcgcggcgccgagcgtggcgatcgcggcggtgatgcg
tcgcggggcagttccggttttggccatcgcggctcgcgcatggcccagcgcccggcgcac
tcggacccgttcttcgacaagccctacgaggcaaccgccagcgtcgatgcgagctgggac
agccagggtgctgccgcgcccaaggcgggcagcggcatcaagcccaagcgcaagctggcc
gcgctgttcaaggcgcctgttgcacctgtcgcgccggtcccgcctgtggcacccgtcgcc
acttccgaggtctga
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