Desulfovibrio sp. 86: DESU86_0486
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Entry
DESU86_0486 CDS
T11413
Name
(GenBank) Ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
delf Desulfovibrio sp. 86
Pathway
delf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
delf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DESU86_0486
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
delf03019
]
DESU86_0486
03009 Ribosome biogenesis [BR:
delf03009
]
DESU86_0486
Enzymes [BR:
delf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DESU86_0486
Messenger RNA biogenesis [BR:
delf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DESU86_0486
Ribosome biogenesis [BR:
delf03009
]
Prokaryotic type
rRNA processing factors
DESU86_0486
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
VZH32602
LinkDB
All DBs
Position
DESU86:497990..501034
Genome browser
AA seq
1014 aa
AA seq
DB search
MLLKFFAVVNPPRRQRTFMTKDQETPVTETQNSGEPSPKPSKPKTRATARGKTAAASETA
AKPAGKIASPSPASKTSPKASPSSASADSAPKSVRPKTARNTAGKSASGKKISGTADAPK
AGTSDTTPAKSGTAPAVKAASEKTAKHAAPAAQTPAEKSVEKTPAAAAAPSTASGDKKPA
AKSRSARGRQTAARTGKDGATAAKAESKAVPAAATAEDVSTNEKGTARNKGTRTGTARGT
ARTHAGKSTAAKPDAATSAADKPAGAAPGKVATANARHDARSEAISEASSDAKPASAAGA
RPSARARAAAPRTKTSAQSPAKKATAQPEKKNLPSSADAPQAKPAPVKTEAAQRQAQAAQ
VQAAHTGKPAAEVKDATLSVTATVASTEVLALASGEKLAIASRESLAITASETLALEAVD
TQDTEGRSEGSDDAPRRKNRRGRRGGRGRNRRKEQNGDNGDMQASDGLAADEVSDDAPQN
GQIQALAEADQASAATPAASPDKKTAEPAKAAGNQKSASAAPTAKGKGKSEASSGRRRMF
ISVLPGEQVEVALTEDGQLLEYYLDMLHQRKIKGNIYKGVIHNIDTNLQAAFVSYGAGKN
GFLQIDEIHPEYWLTHHEPAKGKKFPPIQKVLKAGQEVLVQVVKEPTGSKGAFLTTWLSL
AGRFLVLTPGQEQIGVSRKVDDDEERSRLREMMNGIDPGPGLGVIVRTVSAGTTKTTLKT
DLQYLKRVWRDIRKKATEVTAPALIYQEPGLSERAVRDYLTEDVGEIWVDNEDVAQSIRE
TVNLLFPRKSDLVRLHNDVRTSMWERFNLRRQLDQIYTREVLLPSGGRLVFDQTEALMAI
DINSGKISGKGNFEAMAHKTNMEAAEAIARHLKLRDIGGQVVIDFIEMRDKKHVIEVEKT
LRTIMKNDRARHDVGRMSSFGLLELVRQRTGSSALAITMEPCPACGGTGQRRNIEWQALQ
ALREMHRMLRAENKEKCVYNASPELALYLLNHKRDSLREMEQSYSKCLEISVRP
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgaaatttttcgcggtggtgaacccgccccgcagacaaaggactttcatgacc
aaagaccaagaaaccccagtgacagagacccaaaattccggcgaaccgagcccgaaacct
tccaaacccaagacccgcgctactgcccgcggaaagacggctgctgcctctgaaacagcg
gccaaaccggcaggaaaaatagcgtctccttcccccgcttccaagacttcccccaaggct
tctccttcctccgccagcgcggattccgcaccaaaatccgtcaggcccaagactgccaga
aacacggcgggtaaatccgcctcgggcaaaaaaatctccggcacggcagacgcccccaag
gcgggcacgtctgacaccacgcctgcgaagtctggcactgcgcctgcggtaaaggctgca
tcagaaaaaaccgccaagcatgccgcgccagcggcgcagacgcctgcggaaaagagtgtg
gaaaaaacgccagccgccgctgccgccccttccaccgccagcggcgacaaaaagcccgcc
gcaaaatccagatccgcccgaggcaggcagacggccgccaggacgggcaaggacggcgcg
accgccgccaaagcagagagtaaggccgttccggcggcagccacggctgaagacgtgtct
accaacgaaaaaggcactgccagaaacaagggcacaagaaccggaacagccaggggcacg
gcccggacgcatgctggcaaaagcacggccgccaagccggatgccgccacaagcgccgct
gacaagcctgctggtgctgctccgggcaaggttgcgacggccaacgccagacacgacgcc
agatctgaagccatctctgaagccagttctgacgcaaaaccggcttccgctgccggggct
cgcccttcggccagagcccgcgccgccgcgccccgcacaaaaacgtcggcccagagtcct
gccaaaaaggccaccgcacagcctgaaaagaaaaatctcccgtcctccgccgatgccccc
caggccaagcctgccccggtcaaaaccgaagccgctcagcgccaggcgcaagccgctcaa
gttcaggccgcgcacactggcaaacccgctgccgaggtcaaggacgccacgctttccgtc
actgcgacggtcgcatccaccgaagtgctggcgctggcttccggcgaaaagctggctatt
gccagccgcgaatctcttgccattacggcctctgaaaccctggcgctggaagctgtagac
acccaggatactgaaggacgctccgaaggctccgacgatgcgccgcgccgcaagaacagg
cgtggacgtcgcggaggacgtggccgcaaccgcagaaaagagcagaatggcgataatggc
gatatgcaggccagcgacggactcgctgccgacgaggtaagtgacgacgcgccgcagaac
ggccagatccaagcccttgccgaagcggatcaggccagcgccgccacgcctgccgccagc
cctgacaagaaaacggccgaaccggccaaggctgccggcaaccagaaatctgcttctgca
gcgccgacggccaagggcaagggaaaatccgaagcaagctccggcagacgccgcatgttc
atcagcgttttgccaggcgagcaggttgaggtggccctgaccgaagacggccagttgctt
gaatattacctggacatgctgcatcagcgcaaaatcaagggcaatatttacaagggcgtc
atccacaacatcgataccaatcttcaggccgcttttgtgagctacggcgcaggcaaaaac
ggcttcttgcagattgacgaaatccatcccgaatactggctgacgcatcacgaacccgcc
aagggcaaaaaatttccgcccatccagaaagtgctcaaggccggacaggaagtgcttgtt
caggtcgtgaaggaacccacaggcagcaagggcgcgtttttgaccacgtggctctcactg
gccggacgttttcttgtgctcactcccgggcaggaacagatcggcgtttcgcgcaaagtg
gacgacgatgaggagcggagccgcctgcgcgaaatgatgaacggcattgaccccggccct
gggctgggtgtcatcgtgcggacggtcagcgcgggaaccaccaagaccaccctcaagact
gacctgcaatatctgaagcgcgtctggcgcgatattcgcaaaaaagccaccgaggtcacg
gcccctgcccttatctatcaggaacccggcctgtcggaacgcgccgtgcgcgactatctg
acggaagacgtgggcgaaatatgggtggacaacgaggatgtggcccagagcatccgcgaa
accgtcaacctgctcttcccccgcaagagtgatctcgtgcggctgcacaatgatgtgcgc
acctccatgtgggaacggttcaacctgcgccgtcagcttgaccagatttatacccgcgaa
gtgctgctgccctctggcggacggctggtctttgaccagaccgaggccctcatggccatt
gatatcaactcgggcaaaatatccggcaagggcaactttgaagccatggcccataaaacc
aatatggaagccgccgaagccattgcccgccacctcaagttgcgcgacatcggcggacag
gtggtcatcgacttcattgaaatgcgcgataaaaagcacgtcattgaagtggaaaagacc
ctgcgcaccatcatgaagaacgaccgcgcgcggcatgatgtgggccgcatgagctccttt
ggccttcttgaactcgtgcgtcagcgcaccggctcatcggccctggccatcaccatggag
ccctgccccgcctgcggcggcacgggccagcgccgcaacatcgagtggcaggccctccag
gccctgcgggaaatgcaccgcatgctgcgcgctgaaaacaaagaaaaatgcgtctataac
gcctcgcccgaactggctctgtatctgctcaaccacaagcgcgacagtctgcgtgaaatg
gaacaaagctacagcaaatgtctggaaatatccgttcgtccgtaa
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