Desulfovibrio sp. 86: DESU86_1848
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Entry
DESU86_1848 CDS
T11413
Name
(GenBank) Ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
delf Desulfovibrio sp. 86
Brite
KEGG Orthology (KO) [BR:
delf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
delf03016
]
DESU86_1848
Enzymes [BR:
delf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DESU86_1848
Transfer RNA biogenesis [BR:
delf03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
DESU86_1848
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NCBI-ProteinID:
VZH33964
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Position
DESU86:1869309..1871543
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AA seq
744 aa
AA seq
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MSDCVRYPAPGCVVEYMEGNAVQIALITEEAGGRLRLLLPNRRETRLNASRLLPWLGPLH
GADLGRDEAVRLLEQHKKCREELASDVPVMDVWELAQGEVSVAPATWFAELFSSDPSADQ
VSAYGRALLACKSHFRFQPPDFQVFPADMVEKRLVEEKNRLEREALIAGGAAFLRMLWDV
ACRKRELPPPPAEGAGSGEWPSADVAESLEEVLRSRMVDPEGQEFDALWRTLGKGLPDVP
HLPLQLLVAWGKVPPHYNFWLDRAGFASGDDWWTAHREEVDALVRAADSGQMPDAALFAP
AAATPCMCDPAAASIPAVPPATTLLFEPGPLPESPLPFVSIDSASTRDVDDAFHVQPTDD
GYLLTLALACPALYWHFGGALDKAVLHRGTSIYLPEGDCHMLPEVLGTAAYSLLAGTPRP
ALCVEVPVDAQGRYGSCRTYLARVRLAANLTYRDSQAVLDAQSEGVALPDNPAAAHAGQL
SAGLELARKRQDARIEDGAVVMDRPDPVISLEGEGADVRVHVGPDYCAPQAQMLVAEMMI
LASAAVAHWARERDMAMLHRVQDVVLPREYAGVWSTPQDMTRIMRALTPSGLEVQARPHA
ALGLDRYTPVTSPLRRYPDLVNEAQVVHFLCTGQPRWSEDALVSLLHALSPALDGAGQVQ
RFRPRYWKLLFFRQQGDKVWWPGVITEENDAFVSVSLPDQGMFVRGRRKLFDDRAHPGLQ
VDVRIGKVHPLYNEIMILEAATAG
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgtcggattgtgtgcgctacccagcgccgggctgcgtggtggaatatatggagggcaat
gctgttcagattgccctgattactgaagaggccggggggcgtttacgccttcttttgccc
aaccgccgtgaaacgcggctcaatgcctcgcgtctgctgccctggctcggccccttgcat
ggggcggatcttggccgcgacgaggctgtgcgcctgcttgaacagcataaaaaatgccgt
gaggaactggccagcgacgtgcccgtcatggacgtgtgggagctggcgcagggcgaggta
agcgtggctcctgccacgtggtttgccgagcttttttcctccgacccctcggcggaccag
gtgtccgcctatggccgcgccctgctggcgtgtaaaagccactttcgctttcagccgccg
gattttcaggtctttcccgctgacatggttgaaaaacgcctggtggaagaaaaaaaccgc
cttgaacgtgaagccctcatagcgggcggcgcggcctttttgcgcatgctctgggatgtg
gcctgccgtaagcgtgaactgccgccgccaccggcggaaggcgcgggcagcggcgagtgg
ccgtccgcagacgttgcggaaagccttgaagaagtgctgcgatcccgcatggttgatcct
gaagggcaagaattcgacgccctgtggcgcacccttggcaagggcttgcctgatgtgccc
catttgcccctgcaactgctggtggcctggggcaaggtgccgccgcactacaatttctgg
cttgaccgtgcgggctttgcctctggcgacgactggtggacggcgcaccgcgaggaagtg
gacgcgctggtgcgcgccgccgacagcggccaaatgcccgatgcggcgcttttcgcgcct
gccgcggcaacgccgtgcatgtgcgaccctgccgccgcgtccatccctgctgtgcccccg
gcgactaccctgctttttgaacccggtccgctgcccgaaagtccgctgccctttgtcagc
atagacagcgccagcacccgcgacgttgacgacgcctttcatgtgcagcccacggacgac
ggctatctgttgacgctggctctggcctgtccagccctgtactggcattttggcggcgct
ctggacaaggctgtgctgcaccggggcaccagcatctacctgcccgaaggcgactgccac
atgctgccggaagttctgggcacggcggcgtattcgctgctggcgggcacgccgcgccct
gcgctgtgcgtggaggttccggtggacgcccagggccgttacggttcctgccgtacctat
ctggcccgcgtccgccttgccgccaacctgacctaccgtgacagccaggccgtgctggat
gcccagtccgagggcgttgccctgcccgacaatcccgccgccgcgcatgccgggcaactg
tccgccgggcttgaactggcccgcaaacggcaggatgcccgcattgaagacggggccgtg
gtgatggacaggcccgatcccgtcatatcccttgaaggcgaaggtgccgacgtgcgcgtg
catgtggggcctgactactgcgcgccccaggcgcagatgctggtggcggaaatgatgatt
cttgccagcgccgctgtggcccactgggctagggagcgcgacatggccatgctgcaccgc
gtgcaggacgtggttttgccccgtgaatacgctggcgtctggagtaccccgcaggacatg
acgcgcataatgcgcgcgctgacgccctcggggcttgaggtgcaggcccggccccacgcg
gctttgggccttgatcgctacacgcccgtgacctcgcccctgcgcaggtatcctgatctt
gtcaacgaggctcaggtggtgcatttcttgtgtacgggacagccccgctggagcgaagac
gcgcttgtgagccttttgcacgcgctttcgcccgcactggacggcgccggacaggtgcag
cgcttccgcccgcgctactggaagctgctgttctttcggcagcaaggcgacaaggtgtgg
tggcccggcgtgatcacggaggaaaacgacgcctttgtgagcgtgagcctgccggatcag
ggcatgtttgtgcggggccggcgtaaactttttgacgacagggcacatcccggattgcag
gtggatgtgcgcatcggcaaggtgcatcccctgtataacgagatcatgattctggaagcg
gccacggcagggtag
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