Desulfovibrio sp. 86: DESU86_2612
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Entry
DESU86_2612 CDS
T11413
Symbol
rnj
Name
(GenBank) Ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
delf Desulfovibrio sp. 86
Pathway
delf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
delf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DESU86_2612 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
delf03019
]
DESU86_2612 (rnj)
Messenger RNA biogenesis [BR:
delf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DESU86_2612 (rnj)
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NCBI-ProteinID:
VZH34725
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Position
DESU86:2682739..2684397
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AA seq
552 aa
AA seq
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MKESYLTITPLGGLGEIGLNCQLWETAGGVVMVDCGLMFPDDAHLGVDVVIPHFGAVCAI
KDKLLGIVLTHGHEDHIGALPWLLPELKGTRIFGSRFTLALVEHKLREREILDWAELCPV
DAQTVLPLGDLTFHFFPVCHSIPEGFGLGVETPIGRVVHSGDFKIDPHPLDGTGTDLGVF
RDFAGPKGARLLLSDSTNVMREGHSLTEREVKDSLEKIFARAEGRIVITLFSSHIQRIQE
VFDLAREFGRTVVISGKSLANNIEMARDLGIAKLPPSFFNAHNGVPDLPDNEQVLVVTGA
QGEPMSALSRMVLGGHRQLEIRKGDTVVMSSRMIPGNAKAVSKLINEMYRMGAEVLYESV
HAIHASGHAQREELRAMFEAVRPELFVPVHGEYQHLVKHGRLAVECGVKEENVILLEDGL
PLTLLEDSFRLEQKVSVECTLVDGKGVGDVGYAVLRERRILGDEGMVIVVLVVDSETGSV
LHGPEMISKGFVFEQHYSHLLEDAKCLVLDEIEAARPGQLNRMQEGIRSSLRRFFRRILE
RDPVVVAIISEV
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaatcctaccttactattacgcccctggggggccttggggaaatcggccttaac
tgtcagttgtgggaaaccgcaggcggcgtggtcatggtggactgcggccttatgtttcct
gacgacgcccatctgggcgtggacgtggttatcccccattttggcgctgtctgcgccata
aaagataaattgctcggcattgtgctcacgcacgggcacgaagaccacatcggggctctg
ccctggcttttgcccgaactcaagggcacgcgcatctttggttcgcgttttacccttgcc
cttgtggaacacaaactgcgtgagcgtgaaatcctcgactgggcggaactgtgccccgtg
gacgcgcagacggttttgcctctgggcgatctgacctttcatttttttccggtctgccac
tccattcccgaaggctttggcctgggagtggaaacgcccatagggcgcgtcgtccacagc
ggcgacttcaagattgatccgcatcctcttgacggcacgggcacggacctgggcgttttt
cgcgatttcgccgggcccaagggcgcgcgtcttctgctttcagactccacaaacgtcatg
cgtgaagggcattccctcacggaacgggaagtgaaggactcgctggagaagatttttgcc
agggcggaagggcgcatcgtcattacgcttttttcaagtcatatccagagaatacaggaa
gtattcgaccttgcgcgcgaattcgggcgcactgtggtcatcagcggaaaatccctggcc
aacaatatagagatggcccgcgatcttggcatcgccaagctgccgccgtcctttttcaac
gcccacaacggcgtgcccgaccttcctgacaacgagcaggtgcttgtggtcacgggcgcg
cagggcgaacccatgtcggccttgtcgcgcatggtgcttggcggccaccgccagctcgag
atccgcaagggcgataccgtggtcatgagttcgcgcatgattccgggcaatgccaaggcc
gtgtccaagctcatcaatgaaatgtaccgcatgggtgcggaagtgctgtacgaaagcgtc
cacgccatacacgcctcgggccacgcccagcgcgaagaactgcgggcaatgttcgaggcc
gtgcgccccgagctctttgtgcccgtgcacggcgagtaccagcaccttgtaaagcatggc
cgcctggctgtggagtgtggcgtcaaagaagagaacgtcattcttctggaagacgggctg
cccctgaccctgctcgaagattcgttcaggctggagcagaaggtgtccgtggagtgtacg
ctcgtggacggcaagggcgttggcgatgtgggttacgccgtgttgcgtgagcgtcgcatc
cttggcgatgagggcatggtcattgtcgtgcttgtggtggattcggaaaccggcagcgtg
ctgcatgggccggagatgatttccaagggatttgtgttcgagcagcactacagccatttg
cttgaagacgccaaatgtcttgtgctggacgaaattgaggcggcccgtcccggacagctc
aaccgcatgcaggaaggcatacgctcgtcactgcgccggttcttccgccgcatacttgag
cgcgatcctgtggtggtggccattatcagcgaagtctga
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