Desulfovibrio sp. 86: DESU86_2920
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Entry
DESU86_2920 CDS
T11413
Symbol
groEL
Name
(GenBank) chaperone Hsp60, peptide-dependent ATPase, heat shock protein
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
delf Desulfovibrio sp. 86
Pathway
delf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
delf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DESU86_2920 (groEL)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
delf03019
]
DESU86_2920 (groEL)
03110 Chaperones and folding catalysts [BR:
delf03110
]
DESU86_2920 (groEL)
03029 Mitochondrial biogenesis [BR:
delf03029
]
DESU86_2920 (groEL)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
delf04147
]
DESU86_2920 (groEL)
Enzymes [BR:
delf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
DESU86_2920 (groEL)
Messenger RNA biogenesis [BR:
delf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
DESU86_2920 (groEL)
Chaperones and folding catalysts [BR:
delf03110
]
Heat shock proteins
HSP60 / Chaperonin
DESU86_2920 (groEL)
Mitochondrial biogenesis [BR:
delf03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
DESU86_2920 (groEL)
Exosome [BR:
delf04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
DESU86_2920 (groEL)
Exosomal proteins of other body fluids (saliva and urine)
DESU86_2920 (groEL)
Exosomal proteins of breast cancer cells
DESU86_2920 (groEL)
Exosomal proteins of colorectal cancer cells
DESU86_2920 (groEL)
Exosomal proteins of bladder cancer cells
DESU86_2920 (groEL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
VZH35033
LinkDB
All DBs
Position
DESU86:complement(3014140..3015789)
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AA seq
549 aa
AA seq
DB search
MSAKEIFFDVKAREKLSRGVDKLANAVKITLGPKGRNVAIEKSFGAPVITKDGVTVAKEI
ELSDKFENMGAQLVKEVASKTSDAAGDGTTTATILAQAIYREGIKLVAAGRNPMAIKRGI
DKAVESLIAELANLAKPTRDQKEIAQIGTISANSDTTIGNIIAEAMSKVGKEGVITVEEA
KGLETTMDVVEGMRFDRGYLSPYFVTNPEKMVCEMDNPYILCTEKKISSMKDMLPVLEQV
AKVNRPLMIIAEDVEGEALATLVVNKLRGALQVVAVKAPGFGDRRKAMLQDIAVLTGGQV
ASDDTGSKLENMSLAELGTAKRIVIDKENTTIVDGAGKSEDIKARVKQIRAQIEDSTSDY
DREKLQERLAKLVGGVAVVHVGAATEVEMKEKKDRVEDALNATRAAVEEGIVPGGGTALI
RVAKVLCDIKPADDDELAGVNIIRRAIEEPLRQIAHNAGFEGSIVVERVREGKDGFGFNA
ATGEYEDLIKAGVIDPKKVTRTALQNAASVASLLLTTECAICEKPEPKKEAAMPDMGGMG
GMGGMGGMY
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctaaagaaattttttttgatgttaaagcccgcgaaaaactttcccgtggcgtt
gataagcttgccaatgccgtcaagattacccttggccccaaaggccgcaacgtggccatt
gaaaagtcgtttggcgctcccgtcatcaccaaggacggcgtgacggttgccaaggaaatc
gaactttccgacaagtttgagaacatgggcgcccagctcgtcaaggaagtggcctccaaa
acttccgatgccgctggcgacggtaccaccaccgccaccattctggcccaggccatttac
cgcgaaggcatcaagcttgtggctgctggccgcaatcccatggccatcaagcgcggcatc
gacaaggctgttgaaagcctgatcgccgaacttgccaatcttgccaagcctacccgcgac
cagaaagaaatcgcccagatcggcaccatttctgccaactccgacaccaccatcggcaac
atcattgccgaagccatgtccaaagtgggcaaggaaggcgtcatcacggttgaagaagcc
aagggcctcgaaaccaccatggatgtggttgaaggcatgcgctttgaccgcggctacctt
tccccctacttcgtgaccaatcccgaaaagatggtctgcgaaatggacaatccttacatc
ctctgcacggaaaagaaaatctccagcatgaaagacatgctgcccgtgcttgagcaggtt
gccaaggtaaaccgtccgctcatgatcatcgctgaagacgtggaaggcgaagccctggcc
accctggtggtcaacaagctgcgtggcgccctccaggttgtcgccgtgaaggctcctggc
ttcggcgaccgccgcaaggccatgcttcaggatatcgccgtgctgaccggcggccaggtg
gcttccgacgacaccggctccaagcttgaaaacatgagcctggccgaacttggcaccgcc
aagcgcattgtcatcgacaaggaaaacaccaccattgttgacggcgctggcaagagcgaa
gacatcaaggcccgcgtgaagcagatccgcgcccagatcgaagacagcacctccgactat
gaccgcgaaaagctgcaggaacgtcttgccaagctggtgggcggcgtggccgtggtgcat
gtgggcgctgccactgaagtggaaatgaaggaaaagaaagaccgcgttgaagacgccctc
aatgccacccgcgctgccgtggaagaaggcattgtgcctggcggcggtaccgccctcatc
cgcgtggccaaggttctttgcgacatcaagcccgctgacgacgacgaactggctggcgtg
aacatcatccgccgcgccattgaagagcccctgcgccagatcgcccacaatgccggcttt
gaaggctccatcgtggtcgaaagggtgcgcgaaggcaaggacggcttcggtttcaacgcc
gctaccggcgaatacgaagacctcatcaaggctggcgtcattgaccccaaaaaggtcacc
cgtacggctctgcagaatgccgcttccgtggcctccctgctgctgaccaccgaatgcgcc
atttgcgaaaagcccgaacccaagaaagaagctgccatgcctgacatgggcggcatgggt
ggaatgggcggcatgggcggcatgtactaa
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