Desulfovibrio sp. 86: DESU86_3248
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Entry
DESU86_3248 CDS
T11413
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
delf Desulfovibrio sp. 86
Pathway
delf03030
DNA replication
delf03430
Mismatch repair
delf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
delf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DESU86_3248 (dnaE)
03430 Mismatch repair
DESU86_3248 (dnaE)
03440 Homologous recombination
DESU86_3248 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
delf03032
]
DESU86_3248 (dnaE)
03400 DNA repair and recombination proteins [BR:
delf03400
]
DESU86_3248 (dnaE)
Enzymes [BR:
delf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DESU86_3248 (dnaE)
DNA replication proteins [BR:
delf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DESU86_3248 (dnaE)
DNA repair and recombination proteins [BR:
delf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DESU86_3248 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
VZH35361
LinkDB
All DBs
Position
DESU86:complement(3352786..3356268)
Genome browser
AA seq
1160 aa
AA seq
DB search
MSDFVHLHCHTEYSLLDGAIRIKDLCARAKDFGMPACAITDHGNLFGAAYFYQGCKDFGV
KPIFGCEVYVCHDHTDKKTESPLARKRNHLILLAQNKTGYHNLVKLVSHGFLEGFYYKPR
VDKALLRKYSEGLTCLSACIAGEIPRAILADNMDLAKKLTLEYASIYPGRFYLELQSNGL
KEQEKANIALMELAETCKLPLVATNDCHYLGADDAEAHEVLLCIQTQTTMDDPKRMKFGT
HELYYKSIEEMEKSFSHVPEALSNTMRIAEECNVALDFGNHYFPVYQLPEGASMESEFRR
LAEDGLEKRLKKHPDRASINADMYRERLQYELRVILEMGFPSYFLIVQEFINWAKNNNIP
VGPGRGSAAGSLVAWALRITNLDPIPYNLLFERFLNSERVSLPDIDVDFCERRRGDVIRH
MVETYGEGSVAQITTFGTMKAKGVVRDVGRALGMSFAETDRIAKLVPADLKMTIKKALEA
EPELEKLYLEDQQVKHLLDTARRLEGLARHASTHAAGLVVSDKPMEEYLPLYLGKRGELV
TQFDGPMTEKAGLVKFDFLGLKTMTLIQDTLDNISLQGQSPPDLDNLPLTDTETYDLYAR
GETDGVFQVESSGMRQYLRMLRPTCFEDIIAMLALYRPGPLGSGMVDEFIKRKHGQVPVI
YPHDSLTDCLRDTYGVIVYQEQVMQIAQIIASYTLGGADLLRRAMGKKKAEAMAKERVTF
VAGATSNGISEEKANEIFDLMEKFAEYGFNKSHSAAYALISYYTAYLKVHFKVEFMAALL
TSEMGNQDKLLKYVSCCKDMGIDVVQPSVNRSQREFTAYEGKVVFGLGGIKNVGDEAIRE
LVESRNAEGEFASLFDLCCRVNLRKVTKRVLESLIKGGACDCFGVARAAMLASLEAVVSR
AQKKAKDKNSNQVSLLAMAPAVESAPQPGIGLDCPEADLPEMPDEDKLRAEKEALGFFLT
SHPLQPYVREIRRLGLTTLEDARDMFPGAEVRCAVLVTGIREVITKSKGERMAFAAIEDL
TGHGEVTFFPRSYAEVRQLLHSEQPLCLTARLDKEPEDSRDLDEDNEDAPRELKLLGQSL
LLMAECCGLNDTPVCVQIPSHRMGREDLLALRNILENHPGPVETHAQVCLEGHVCHLHLD
NNLKVSPGPDLDKAIAAWAS
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatttcgttcatttgcattgccataccgagtacagcctcctggacggcgccata
cgcatcaaggatctttgcgcccgcgccaaagatttcggcatgcccgcctgcgccattaca
gaccatggcaatctttttggcgcagcctacttttatcagggctgcaaagacttcggcgtc
aagcccatattcggctgcgaggtttacgtctgccatgaccatacggacaaaaaaacggaa
tcgccgctggcccgcaaacgtaaccacctgattttgctggcgcaaaataaaacgggctac
cacaatcttgtcaaactggtaagtcacggttttcttgagggtttttactacaaaccccgc
gtggacaaggccctgctgcgcaaatattccgaagggcttacctgcctttcagcctgcatc
gccggcgaaatcccccgcgccatcttggccgataatatggatctcgccaaaaaactcacc
ctggagtacgccagcatctaccctggccggttttaccttgagctgcaatccaacggactg
aaagagcaggaaaaagccaatattgcccttatggagttggccgaaacctgcaaactgccc
ctggtggccaccaacgactgccattaccttggcgcggacgacgccgaagcccatgaagtt
ctgctctgcatacagacgcagaccaccatggatgaccccaagcgcatgaagttcggcacc
catgagttgtactacaaatccattgaagagatggaaaagtcattcagccatgtgcccgaa
gcgctgtccaacaccatgcgcattgccgaggaatgcaatgtggctctggacttcggcaac
cattatttccccgtgtaccagttgcccgaaggggccagcatggaatcggaattccgccgt
ctggccgaagatggtcttgaaaaaaggctgaaaaaacacccggatcgggcttccatcaat
gccgacatgtaccgtgaacgcctgcagtacgaactgcgcgtcattctggaaatgggcttt
ccaagctacttcctcatcgtgcaggaattcatcaactgggcaaaaaacaacaatattcct
gtaggcccggggcgcggatcggccgccggatcgctggtggcatgggccttgcgcatcaca
aaccttgaccccatcccctacaatctgctgtttgaacgctttttgaacagcgaacgcgtg
tcattgcccgatatcgacgtggacttctgcgaacggcgtcggggcgacgtcatcaggcat
atggttgaaacctacggcgaggggtcggtggcgcagatcaccacctttggcaccatgaag
gccaagggcgtggtgcgcgacgtgggccgtgcgttgggcatgagctttgccgaaaccgac
cggattgccaaactggtgcccgccgacctcaagatgaccattaagaaagcgcttgaagcc
gaaccagaactggaaaagctctaccttgaagaccagcaggtcaagcacctgctggatacg
gcacgtcgtcttgaagggctcgcgcgccacgcctccacccatgccgcaggccttgtggtg
tccgacaagcccatggaggaatacctgcccctctatctgggtaaacgcggcgaacttgtg
acccagttcgacggccccatgaccgaaaaagccgggctggtgaaattcgactttctgggt
ctcaagaccatgaccctgattcaggacaccttggacaacatcagccttcaggggcaatct
ccgccggatctggacaatctgccgctcaccgataccgaaacttacgacctgtatgccagg
ggcgagaccgatggcgtttttcaggtggaaagctcgggcatgcgccagtatctgcgcatg
ctgcggcccacgtgctttgaagacatcatcgccatgctggcgctatatcggcccggccct
ctcgggtccggcatggttgacgaattcatcaagcgaaagcacggccaggtgcccgtcatc
taccctcatgactcgcttaccgactgcctgcgcgacacctacggcgttatcgtgtaccag
gaacaggtcatgcagatcgcccagatcatcgccagctacacgctgggcggagccgacctg
ctgcgccgcgccatgggcaagaaaaaggccgaagccatggccaaggagcgcgtcaccttt
gtggctggcgccacaagtaacggcatcagcgaagaaaaagccaacgaaatattcgacttg
atggaaaaatttgcggaatacggcttcaacaagtcgcactctgccgcctatgctctcatt
tcctactacaccgcctatctcaaggttcactttaaagttgaatttatggctgccctgctc
acctcggaaatgggcaatcaggacaagctgctcaaatacgtctcctgctgcaaagacatg
ggcattgatgttgtgcagccttcagtgaaccgcagccagcgcgagtttacggcctatgaa
ggcaaggtcgtattcgggctgggcggcatcaagaacgtgggcgacgaagccatccgcgaa
ctggtggaatcccgcaatgctgagggagaattcgcctcgctctttgacctgtgctgccgc
gtgaacctgcgcaaggttaccaagcgcgttctggaatctcttatcaagggcggcgcttgc
gactgctttggcgtggcacgcgccgccatgctggcttcgcttgaagcagtggtctcccgc
gcgcagaaaaaggccaaggacaaaaactccaatcaggtgtctttgctggccatggccccg
gcggtggaaagcgcgccgcagcccggcatcgggctcgactgccctgaagccgatctgccc
gaaatgcccgacgaagacaaactgcgcgccgaaaaagaggctctgggtttctttcttaca
agccatccgctgcagccctatgtgcgtgaaatccgccgtctgggactcacaacccttgaa
gacgcccgcgacatgtttcccggcgccgaggtgcgctgcgccgtgcttgtaaccggcatt
cgcgaggtcataaccaagagcaagggcgaacgcatggcttttgcggccattgaagacctc
acgggccatggcgaggtgacctttttccctcgcagttatgcggaagttcgccagctgctc
cattcggagcagccgctgtgccttaccgccaggctggacaaggagccggaagacagccgc
gatctggacgaagacaatgaggacgccccccgcgaactcaaacttctgggtcaaagtctg
ttgctgatggccgagtgctgcgggctcaacgatactccggtatgcgtgcagattccctcg
caccgtatgggccgggaggacttgctggcgctgcgcaacatccttgaaaaccatcctggc
cccgtggaaactcacgcccaggtctgccttgaaggacacgtctgccatctgcatctggac
aacaacctcaaggtcagccctggcccggatctggacaaggctatagccgcatgggcttca
taa
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