Desulfitobacterium elongatum: DESULF6_13980
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Entry
DESULF6_13980 CDS
T11905
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
delo Desulfitobacterium elongatum
Pathway
delo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
delo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DESULF6_13980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
delo03019
]
DESULF6_13980
03016 Transfer RNA biogenesis [BR:
delo03016
]
DESULF6_13980
Enzymes [BR:
delo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
DESULF6_13980
Messenger RNA biogenesis [BR:
delo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DESULF6_13980
Transfer RNA biogenesis [BR:
delo03016
]
Prokaryotic type
tRNA degradation factors
DESULF6_13980
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
KH_2
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
BFU38059
LinkDB
All DBs
Position
1508523..1510682
Genome browser
AA seq
719 aa
AA seq
DB search
MKQEVFERSIQVGGRTMTFQTGKIGKQAGGAIFCRYGDTVISAFATASNEPREGISFFPL
TVEFEERLYAAGKIPGGFIKREGRPSEKAILSARLIDRPIRPLFPEGYRNDVQVVTQVMS
VDQDCASDITAINAASAALTISNVPFEGPIASVTVGLIGDEFIINPTVEQAEKSLMHLTV
AGTKDAVMMVEAGAQEVPEAQMLEAIMFGHREVQRIAEFLENYRAEALEKNLAKPKQEVK
VDHIPENILEAVKSYAYDKMDAAVRTEEKKAREVAIKLVKDETLAHFAEELPDQLRYIDR
ALEDFVHKIVRRLITVEHIRPDGRALDEIRPISIDVGILPRTHGTGLFTRGQTQVLTVTT
LGAVGDEQILDGLGLEESKRYMHHYNFPPYSVGETRPMRGPGRREIGHGALAERALVPVI
PNENEFPYTLRLVSEVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLISEADHI
AILTDIQGLEDHDGDMDFKVAGTSEGITALQMDIKIKGVSREILERALSQAKAGRLFILD
KMLGAIEKPRPELSPYAPRIITASIHPDKIRDVIGPGGKTIKKIIEETGVKIDIEDDGRV
FISAVDGEAGDKALKIIQSLTQDIEVGRIYNGRVTRVMDFGAFVEVIPGVLGLNGKEGLV
HISQLAHNRVEKVEDVVKVGDEILVKATGVDKQGRLNLSRKEALPNPNPNSNGTSPNKK
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacaggaagtttttgaacgttcgattcaggtaggtggccgaaccatgacgttccaa
accgggaaaataggaaaacaagcaggcggtgctattttttgtcggtatggagatacggtc
atttctgccttcgcgaccgcaagtaatgaaccacgggaaggaattagtttctttccactc
accgttgaatttgaagagaggctctatgctgcaggaaaaatccctggtgggtttattaaa
agagagggacgtccgagcgagaaagcgattctctctgctcgacttattgatcgcccgatt
cgtcctctattcccagagggctatcgaaatgatgtacaagtcgttactcaggttatgtct
gtggatcaagactgtgcttcagatattactgcaatcaatgctgcttcagcagcactcacg
atttctaatgttccctttgaagggccaattgcatcagtgactgtaggtttgattggagat
gagttcatcatcaatccaacggttgagcaagcagaaaagagcctgatgcatctcacagta
gcaggaacgaaagatgctgtgatgatggtggaagccggagcccaagaagtacctgaagct
cagatgcttgaagcgattatgtttggacatcgggaagttcagcgaattgctgagttctta
gagaattatagagcggaagctttggagaagaatctagccaaaccaaagcaagaagttaag
gtagatcatattccggagaatatcctagaggcagtgaaatcttatgcctatgataagatg
gacgctgcagttcgtaccgaagagaaaaaggcccgcgaagtggcaattaagctagtaaaa
gatgagactcttgctcactttgcagaagagcttcctgatcaacttcgttatattgaccgg
gcactcgaggattttgtacataaaatcgtccgccgcttgatcaccgtggaacatattcgt
cctgacgggagagccttggatgagattcgccccatcagcattgatgtcggaatactccca
agaactcatggaacgggtttatttacacggggacaaacccaagttctgactgtaacaact
ttaggagctgtaggggatgaacagatcctcgatggacttggactagaagaatcgaagcgc
tatatgcatcattataacttccctccctatagtgtaggagaaactcgcccgatgcgagga
ccaggacgccgagaaatcggacatggtgccttggctgagcgtgccttagtgcctgtaatt
ccgaatgagaatgagttcccttatacccttcgactcgtttctgaagttctagaatccaat
gggtctagctctatggcttcagtctgcggaagtacgctttcattgatggatgcaggggtt
cccattaaggcgccggtagcggggatagcgatgggtctaatcagtgaggcagatcatatt
gcgatattaacggatattcaagggcttgaagatcatgatggagatatggactttaaagtc
gctggaacaagtgaaggaattactgccttacagatggatatcaaaataaagggagtttca
agggaaattttagagagagcgttgagccaagcgaaagcaggacgtctcttcattctcgat
aaaatgttaggtgctattgaaaagccgcgtccagagctctctccttatgctccacggatt
attacagcatctatccacccggataagattcgagatgttatcggacctggcggaaaaaca
attaaaaagattatcgaagaaaccggagtgaaaatcgatatagaagacgatggacgggtc
ttcatttctgctgtggatggagaagccggagataaagcgttgaagattattcaatcttta
acccaagatattgaagtcgggcggatctataatggacgggttacccgtgttatggacttt
ggagcctttgtcgaagttataccaggagtacttggacttaacggtaaagagggtttagtt
catatttcacaactagcccataatcgagtagagaaggtcgaggatgtcgtaaaggttgga
gatgaaattctcgtcaaagcaacgggtgtcgataagcaagggcgtttgaacctttcaagg
aaagaagctcttcctaatcctaacccgaattccaatggtacttccccaaacaaaaagtag
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integrated database retrieval system
