Demequina sp. TMPB413: LGT36_000915
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Entry
LGT36_000915 CDS
T08088
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
dem
Demequina sp. TMPB413
Pathway
dem03420
Nucleotide excision repair
dem03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LGT36_000915
03430 Mismatch repair
LGT36_000915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dem03400
]
LGT36_000915
Enzymes [BR:
dem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LGT36_000915
DNA repair and recombination proteins [BR:
dem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LGT36_000915
MMR (mismatch excision repair)
Other MMR factors
LGT36_000915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
HTH_Tnp_1
DEAD
Motif
Other DBs
NCBI-ProteinID:
UPU89787
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All DBs
Position
189158..192418
Genome browser
AA seq
1086 aa
AA seq
DB search
MDARGALHEGLIEGLGRGVAELAGAVDPDRTVTAEQAAIVEAGLGPALVVAGAGSGKTET
LSLRILYLLDNAKRLFGRDIGPDEILCLTFTRKAAAEIAERATRRIGTVFGPDPARPAVS
VSTYNGYAAALAQEHGLRVAVDPGATVLTGAALWQLAQSVVESWDRSVDTDAAVSTVTAA
IPRLASQARDHGLSPERLREWCAKALDFMEALPKRATEGTPGTFTQDLARHVGKVRSLAA
LADLVDEYDARKREGSFLDFSDQVDVAVRLAQLAPVQELERSRYVAVLLDEFQDTSPPQL
DLFARMFGPTHPVMAVGDPNQAIYGFRGASADALRQFIERFGGSAVARHTLSVSWRNEAT
ILQAANAAVAPLAAGPVAGVPLRSRAEELGREESPRAAPGVIATRHVTADDEARAVVGFI
RARREELGHSAATPITAAVLCRRRAQYDAITDACAAAGLDYEVVGLGGLLDVPDVADLLA
LLHVAHDPSRGDSLMRLLAGERVALGPRDLAALHDHAEHLAGPRAEREGSASIVDALASL
PPADWVSERGRSLTSVGLARLRALAHVIDAIRRHTYLPLAELVAFAERSWGLDIETGVAS
HATRARRSVDAFIDAARTFQAGAERATLGAFLAWLEAARAEENGLDAPVREPDPAAVQIL
TVHGAKGLEWDVVAVPGLNDGQFPSVGVPSASNPDYTDSGWLDGVGNVPFELRLDRDQLP
QWRFHSARDHQELAESLADFKREAGQYRLEEERRLFYVALTRARSHVLLSGSWYSGGKRP
RDPSGYVMELLKDARADAGQWEDLPADDEAPDPVERPPALWPRPVTRRQAALRELAAAVR
SSMAPLGESGPPSTAPMAAIGDQGLPLSREISAMLAERADRGRGSDQIELPWHVSTSALV
AMSRDRAAFAAQLRRPIPVEPTRAAQQGSALHAWIEARYGHVPLWEDEDSDDAAAAELDA
LKETFLASEWASRTPTHVEADVELPVGNVTVRSRIDAVFAPGAGLDRVTVVDWKSGRPPR
DDSERSAREVQLAMYRLAWSARTGIPVEQIDAAFYYVAADLTVRPEHLWGRKEIEELLAG
SARNSS
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atggacgcacgtggggctctgcacgagggcttgatcgagggcctcggacgcggcgtggcc
gaactcgccggagccgtcgaccctgatcgcaccgtcaccgcggagcaagcggcgattgtc
gaggcgggcctcggccccgccttggtggttgctggagcaggctccggcaagaccgaaacg
ctttcgctacgcatcttgtacctgcttgacaacgcgaagcgcctcttcggcagagacatc
gggcccgacgagatcctgtgtctcacgttcacgcgcaaggccgcagcggaaattgccgag
cgcgcgacccgccgcatcggcaccgtctttggcccggatcccgctcggccagcggtgagc
gtgtcgacgtataacggctacgccgcagccttggcgcaggagcacggcctcagggtggcc
gtcgaccccggcgcaacggtgctgacaggagcggcgctgtggcaactcgcgcagtcggtg
gtcgaatcgtgggatcgatcggttgacaccgacgctgcggtgagcacggtgacggccgcg
attccgcggctcgcgtcgcaggctcgcgaccatgggctgagtcctgagcggctccgcgag
tggtgtgcgaaggcgctggactttatggaggccttgccgaagagggccacggagggcacg
ccaggcaccttcactcaagatctcgcgcggcacgtcggaaaggtgcgctccctggccgcg
ctcgccgaccttgtcgacgaatacgacgcgcgcaagcgcgagggatcctttctcgacttc
tctgaccaggtcgatgtcgcggtgcggctcgcacaactggctcccgttcaagaactcgaa
cgctcccgctacgtcgcggtcttgctcgacgagttccaagacacgtcaccgcctcagctt
gacctttttgcgcgcatgttcggccccacgcaccccgtgatggcggtgggcgacccgaac
caagcgatctacggcttccgtggcgcatcggctgacgccttgaggcaattcatcgaacgc
ttcggaggaagcgccgtggcgcggcacacgctctcagtcagttggcgcaacgaggcgacg
attctgcaggcggccaacgcggccgtggccccgctcgccgccggacccgtcgcaggggtg
ccgctgcgatcgcgggccgaggagttgggacgtgaggagtcgccacgggccgccccaggc
gtcatcgcgacgcgccacgtcacggccgacgacgaggcgcgcgctgtcgtgggattcatc
cgcgccagacgtgaagagttgggacacagcgcggcgacgcccatcacggcggcggtgctg
tgccgcaggcgcgctcagtacgacgccatcaccgacgcctgtgcggcggcgggactcgac
tatgaggtggtcggtctcggcggcctgctcgatgttcccgacgtcgctgacctcttggct
ttgcttcacgtggcccacgacccgtcgagaggcgactccctcatgcggttgctcgctggc
gagcgcgtggccctcggcccacgcgacctcgctgccctgcacgaccacgccgagcacctc
gctggccctcgcgctgagcgtgagggaagcgccagcatcgtcgatgccctggcgtcgctt
ccgccagccgactgggtatctgaacgcggacgttccctcacctcggttggtcttgcgagg
ctgcgcgcccttgcacacgtgatcgacgcgatcaggagacacacctacttgccgttggcc
gaactggtggcttttgccgagcgctcgtggggcctcgacatcgagactggggtcgcgagc
cacgccacccgtgcaaggcgttcagttgacgccttcattgacgccgcacgcacgttccaa
gcgggcgccgaacgggcgactcttggagcctttcttgcgtggctcgaggctgcgcgggcg
gaagagaacggcctggacgcccctgtgcgcgagcctgatcccgccgccgtgcagatcctc
accgttcacggcgcgaagggccttgagtgggacgtggtcgcggtaccagggctcaacgat
ggccagttcccttcggtcggcgtgccgtcggcgagcaaccctgactacaccgacagtggc
tggctcgacggagtcggcaacgtcccgttcgagttgcgccttgacagggaccagttgcct
cagtggcgcttccactccgcccgcgaccatcaagagttagccgagtccctcgccgacttc
aagcgtgaggccggtcagtacaggcttgaggaggagcgacggctgttctacgtggcgctc
acgagggcccgatcccatgtgttgctgagcgggtcctggtactcaggcggtaagcggcca
cgcgacccatctggctacgtgatggagctgctcaaggacgctcgcgcggacgcaggccag
tgggaggatctgcccgccgacgacgaggcgccggatcccgtggagcgcccgccagccctg
tggccgcggcctgtgacgcgccggcaggccgctttgcgggagttggcggctgcggtgagg
agctcgatggcgccgcttggcgagagcggccctccctccacagcgccgatggcggcaatc
ggcgatcaaggcttgccgttgtcgcgcgagatttcggcgatgctggccgagcgggccgac
agaggacggggaagcgatcagatcgagcttccatggcacgtgtcgacatctgcgctcgtg
gcgatgagtcgcgatcgcgccgccttcgcagctcaactgcgcaggcccatacccgtcgag
ccgacacgggcagcgcagcagggctccgcgcttcacgcgtggatcgaagcgcgctatggt
cacgtaccgctgtgggaggacgaagactcagacgacgccgcggccgcggaactcgacgcc
ttgaaggagaccttcctcgcgtcggagtgggcctcacgcacacctacccacgtcgaggcc
gacgtggaactgcccgttggcaacgtgacggtgcgctcgcgcatcgatgcggtattcgcg
ccaggggcagggcttgatcgggtgaccgtggtcgattggaagtcaggacggccgcctcga
gacgactctgagcgctctgcgagggaggtccagcttgccatgtaccggctggcgtggtcc
gcgcgcaccggtatccccgtcgaacagatcgacgcggccttctactacgtcgctgccgac
ctcacggtgcggccagaacacctgtgggggcgcaaggagatcgaggaactgctcgccggg
tcggcacgcaacagctcttga
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