Demequina sp. TMPB413: LGT36_002690
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Entry
LGT36_002690 CDS
T08088
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dem
Demequina sp. TMPB413
Pathway
dem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LGT36_002690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dem03019
]
LGT36_002690
03009 Ribosome biogenesis [BR:
dem03009
]
LGT36_002690
Enzymes [BR:
dem01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LGT36_002690
Messenger RNA biogenesis [BR:
dem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LGT36_002690
Ribosome biogenesis [BR:
dem03009
]
Prokaryotic type
rRNA processing factors
LGT36_002690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
DUF5119
DUF5351
PCB_OB
DnaJ_CXXCXGXG
FakA-like_C
Motif
Other DBs
NCBI-ProteinID:
UPU88844
LinkDB
All DBs
Position
570880..573135
Genome browser
AA seq
751 aa
AA seq
DB search
MSEDNTTTTPNAVIFQAPQMAPESPPKRAPRRASAPAGPPSAADKPSQAPKATASSRRGK
AASGDDAQKASGSDNGDAGEAKPKRTRAKKAAPTASEGDQPKDQQDGDVQASGSKGQDAS
GDSDSDGDDAAKRRRRRGGRGRGKKRTDGEGDDNAAEPSSADDSGSEDSNDSGSGDDASD
DGDGSGTSRRRRRRSRGSRSSSSNASSSSSSNDDQLQGSTRLQAKRQRRRDSRDGQRRRP
VISEAEFLARRESVKRDMVVREKDGRVQIAVLEDDVLVEHYVSHQAEASMAGNVYLGRVQ
NVLPGMEAAFVDVGRGRNAVLYAGEVNWDAAGLDGKPKRIELALKPGDTVMVQVTKDPIG
HKGARVTSQISLAGRFLVYVPGGGVTGISRKLPDTERNRLKKLLREVIPADAGVIVRTAA
EGASEEELRADVERLKRQWESIEAEAQGGKAPQLLRAEPDMAIRVVRDIFNEDFESLTIQ
GEDTWNSLSAYVGQVATDLAPRLHRFVGDGDVFAAHRIDEQLTKGMDRKVWLPSGGSLVI
DRTEAMTVVDVNTGKFVGKGGTLEETMTLNNLEAAEEIVRQLRLRDIGGIIVIDFVDMLL
EANRDRVLRRLIECLSRDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSETCEHCKGRGF
LVHGEPVGEATEKQPEQPRRRNSRGGSGKAKADEPKPAAEVPALDQRDESREMVKATLAS
IAAAAEKAHHAHEEADTETVAEATEDAPTSD
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgaggacaacaccactaccacccccaacgccgtgatcttccaagcaccgcagatg
gccccggagagcccgccaaagcgcgcgccccgcagggcatcggcgcccgcgggaccgccg
tcggccgcagacaagccgagccaggcgcctaaggcgaccgcctcgtccaggaggggcaag
gccgccagcggcgacgacgcccagaaggcttccggctccgacaacggcgacgccggcgag
gcaaagcccaagcgcactcgtgccaagaaggcagccccgacggcgagcgaaggcgatcag
ccgaaggaccagcaggacggcgacgtccaagcgtcgggcagcaagggccaggacgcttcc
ggtgacagcgacagcgacggcgacgacgctgctaagcgccgacgcaggcgtggcggccgc
ggtcgcggcaagaagcgcaccgacggcgagggcgacgacaacgccgcggaaccgtcgagc
gcggacgactccggttcagaagactcgaacgactccggttcaggcgacgacgcgagtgac
gacggcgacggctccggcacttcgcgcaggcgcaggcgccgcagcaggggctcgcgctcg
tcctcatctaatgcgtcgtcatcctccagcagcaacgacgaccaactccaaggctccacg
cgactgcaggccaagcgtcagcgtcggcgtgattccagggatggccaacgtcgtcgcccc
gtgatctccgaggccgagttcttggccaggcgtgagtccgtcaagcgcgacatggtggtg
cgcgagaaggacggccgcgtgcagatcgccgtgcttgaggacgacgtgctggtcgagcac
tacgtgagccaccaggccgaggcctcgatggcaggcaacgtctaccttggccgcgtgcag
aacgtgctgccaggcatggaggccgcgttcgttgacgtgggtcgcggtcgcaatgccgtg
ctgtacgcaggcgaggtcaactgggacgccgcagggctcgacggcaagccaaagcgcatc
gagcttgctctcaagccaggcgacaccgtcatggtgcaggtcaccaaggacccgatcggc
cacaagggcgctcgcgtcacctcacagatttcgctcgcagggcgcttcctcgtgtatgtg
ccaggcgggggagtgaccggcatcagccgcaagcttcccgacaccgagcgcaaccgcctc
aagaagttgctgcgcgaagtgatccctgccgacgctggggtcatcgtccgtacggcagcc
gagggcgcctccgaggaggagttgcgtgcagacgtcgagcgactcaagcgccagtgggag
tcgattgaggccgaggctcaaggcggcaaggcgccgcaattgctgcgcgccgagcccgac
atggccattcgcgtggtccgtgacatcttcaacgaagacttcgagtccctcaccattcag
ggcgaggacacctggaactccctgagcgcctacgtgggccaggtcgccaccgacctcgct
ccgcgcctgcaccgctttgtgggcgacggagacgtgttcgcggcccaccggatcgacgag
cagctcaccaaggggatggaccgcaaggtgtggctgccctccggcggctcgctcgtgatc
gaccgcaccgaggccatgacggtggtggacgtcaacaccggcaagtttgtgggcaagggc
ggcactctcgaagagacgatgacgctcaacaacctcgaggctgctgaagaaatcgtgcga
cagctgaggctgcgcgacatcggcggcatcatcgtgatcgactttgtcgacatgctgctc
gaggcgaaccgcgaccgcgtgctgcgccgcctgatcgagtgcctgtctcgcgaccgcacc
aagcaccaggtggcagaggtcacctctcttggcctggtccagatgacccgcaagcgcgtg
ggccagggtctggtcgaggcgttctcagagacgtgcgagcactgcaagggccgcggcttc
ttggtgcacggtgagcccgtgggcgaggcgaccgagaagcagccagagcagccgcgcagg
cgaaactcgcgcggaggctccggaaaggccaaggcagacgagccgaagcctgcggcggag
gtgccagcactcgaccagcgcgacgagtcgcgcgagatggtcaaggcgaccttggcgtcc
atcgccgcggccgccgagaaggcgcaccacgctcacgaagaagcagacacggagacggtt
gcggaggcaaccgaggacgcgccgacgtccgattga
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