Demequina sp. TMPB413: LGT36_004380
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Entry
LGT36_004380 CDS
T08088
Name
(GenBank) type IIA DNA topoisomerase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
dem
Demequina sp. TMPB413
Brite
KEGG Orthology (KO) [BR:
dem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dem03032
]
LGT36_004380
03400 DNA repair and recombination proteins [BR:
dem03400
]
LGT36_004380
Enzymes [BR:
dem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
LGT36_004380
DNA replication proteins [BR:
dem03032
]
Prokaryotic type
DNA Topoisomerases
LGT36_004380
DNA repair and recombination proteins [BR:
dem03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LGT36_004380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
Motif
Other DBs
NCBI-ProteinID:
UPU89169
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Position
899373..901469
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AA seq
698 aa
AA seq
DB search
MSSDYSARHLSVLEGLDAVRKRPGMYIGTTDSRGLMHCLWEIIDNSVDEALGGHGNRIEV
ILHPDDSVEVRDTARGIPVDIEPKTGLSGVEVVMTKLHAGGKFGSGSYAASGGLHGVGAS
VVNALSERLDVWVDRGGKTHHMAFRRGEPGKFADPASGPTPDAEFTPFVTGSELDVTGKV
GKAVTGTRIRYWADRQVFNKQASFSYDELIVRARQTAFLVPQLTMVVRDERNPLEPSEQS
FMFEGGSKDFVDFIAPDAAVTDTWLLKGSGTYTETVPVLKPNGHLESEDVDRSCEVDIAL
RWGTGYETEVRSFVNIISTPKGGTHLTGFEQGLTKVVRKVIEANARRLKLSGKDGAERIE
KDDIMAGLTAVVTVRLPEPQFEGQTKEVLGTSPVRAIVAKTIETELGAILTSTKRDFKAQ
ANTVLEKVVAEMRARVAARKQKEISRRKNALETSTLPAKLADCRSNDVELSELFIVEGDS
ALGTAKLARQSDFQALLPIRGKILNVQRASVTDMLHNAECASIIQVLGAGSGRTFDLESA
RYGKIILMTDADVDGAHIRTLLLTLFFRYMRPLVDAGRVYAAVPPLHRIEVNGSARRARE
HIYTYSEKELQETLRELRRAGRSFKDEIQRYKGLGEMDADQLAETTMDPEHRTLRRITAA
DAESAERVFELLMGNDVGPRRDFIVAGAATLDHNRIDT
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
gtgagctccgactactctgcacgtcatctgtcagtccttgaaggattggacgcggttcgc
aagcgtccaggcatgtacatcggcaccacggactcgcgtggattgatgcactgcttgtgg
gagatcatcgacaactcggtggacgaggccctcggcggccatggcaatcgcatcgaagtg
atcctgcatcccgatgactcggtggaggtgcgcgacaccgctcgcggaatccccgtcgac
attgagccgaaaaccggcttgagcggcgtcgaggtcgtcatgaccaaactgcacgccggc
ggaaagttcggctctggctcttacgccgcttctggcggtctgcatggcgtcggcgcctcg
gtcgtgaacgcgctcagcgagcgcctcgatgtgtgggtggaccgtggcggcaagacgcac
cacatggccttccggcgcggtgagcctggcaagttcgctgaccccgcgagcggcccgact
cccgacgccgagttcacgcctttcgtgaccggttccgagctggacgtcacgggcaaggtt
ggcaaggcggtgaccggcacgcggatccgttactgggccgacaggcaggtgttcaacaag
caagcgagcttctcgtacgacgagttgatcgtcagggccaggcagaccgccttcttggtg
cctcagctcacgatggtggtgcgggacgaacgcaatccgttggaaccgagcgagcaaagc
ttcatgttcgagggaggatccaaggacttcgtcgacttcatcgcgccagacgcagccgtc
acggacacgtggctactcaagggctccggaacgtacacggagacagtgccggtgctcaag
cccaacggccacctggagtctgaagatgttgaccgttcatgtgaggtggacattgcactg
aggtggggcaccggttacgagaccgaggtgcgctcgttcgtcaacatcatctcgacgccc
aagggcggcactcacctgacaggcttcgagcagggcctcaccaaggtggtgcgcaaagtc
atcgaggcaaacgcgcgcaggctgaagctgagcggcaaggatggcgccgaacgcatcgag
aaggacgacatcatggcgggcctgaccgccgttgtcaccgtgcgcttgccagaacctcag
ttcgaaggtcagaccaaggaggtcctcgggacatcgcctgtgcgcgccatcgtcgcgaag
acaatcgagacggagcttggcgcgatcctcacctcgaccaagcgagacttcaaggctcaa
gcgaacaccgtgctggagaaggtggttgcggaaatgcgcgccagggtggccgcccgcaag
cagaaggagatctcgcggcgcaagaacgcgcttgagacatcgacgttgcctgccaagctc
gccgactgccgaagcaacgacgtcgagctctctgaactcttcatcgttgagggagatagc
gccctcggaacagccaaattggcgaggcagtctgacttccaggcgctccttccgattcgc
ggcaagatcctcaacgtgcagcgtgcctccgtcaccgacatgcttcacaacgccgagtgc
gcctcgatcatccaggtgctgggcgctggctctgggcgcacgttcgacctcgagtcggct
cggtacgggaagatcattctgatgacagatgccgacgtcgacggcgcccacatccgcacc
ttgttgctgaccctgttcttcaggtacatgcgcccgctcgtggacgccggccgcgtgtac
gcagcggtgccgccgttgcaccggatcgaggtcaatggttccgcccgccgcgctcgggag
cacatctacacgtactccgagaaggaactccaggagacgttgcgggaattgcgtcgagct
gggcgaagtttcaaagacgagatccagcgctacaagggattgggggagatggacgccgac
cagttggcagagacgacgatggaccccgagcatcggactctgcgccgcatcactgcggca
gacgcagaatcagctgagcgcgtctttgaactcctgatgggcaatgacgttggcccacgc
cgagacttcatcgtcgcgggcgctgcgaccctcgatcacaacaggattgatacgtaa
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