KEGG   Demequina sp. TMPB413: LGT36_006395
Entry
LGT36_006395      CDS       T08088                                 
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
  KO
K03578  ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
Organism
dem  Demequina sp. TMPB413
Brite
KEGG Orthology (KO) [BR:dem00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dem03019]
    LGT36_006395 (hrpA)
Enzymes [BR:dem01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     LGT36_006395 (hrpA)
Messenger RNA biogenesis [BR:dem03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Others
     LGT36_006395 (hrpA)
SSDB
Motif
Pfam: DUF3418 OB_NTP_bind Helicase_C HA2_C DEAD AAA_22 WHD_HA2 AAA_19 nSTAND3 NACHT nSTAND_NTPase5 T2SSE SRP54 PhoH TsaE
Other DBs
NCBI-ProteinID: UPU89553
LinkDB
Position
1317157..1321428
AA seq 1423 aa
MASSRRADNRAPARAQVGATSAKSSASRAKAAAARAAVEVPPIIYPEELPVSARRDDIAA
ALRDHQVVIVAGETGSGKTTQIPKIALDLGRGRAGQIGHTQPRRIAARSVADRIAEELGT
TLGDIIGYQVRFTDTSSERTLVKVMTDGILLAQIQRDPDLLAYDTLIIDEAHERSLNIDV
LLGYLTNLLPRRPDLKLIITSATIDSERFARHFAPGGPIPDDAGVGDDAGARGADAVTSA
DLADARPTAPVIQVTGRTYPVEMRYRPLAGETRGEERDLMTGITDACDELMREGPGDILV
FLSGEREIRDAVEALEGHLGPRVRDAKHPQALELLPLYSRLSAAEQHRVFASHSRRRIVL
ATNVAETSLTVPGIHYVVDPGTARISRYSKATKVQRLPIEPISKASANQRAGRAGRLADG
IAIRLYSEDDFAARPDFTEPEILRTSLASVLLQMISVGVVSTPDEVAAFPFVEPPDTRAI
KDGIQLLSDLGAVTTNRGGKARLTDVGRKLARLPIDPRQARMIVEGERHGVAYEAAVIAA
ALSIQDPRERPSDKRAEADLQHRRFSTPTSDLLGYLNLWAYLRDRQHELSGSAFRRMCRS
EFLNYLRVREWQDLVQQLRQAAKPLGIHVKARAAKPIAADDAEGAKGTTDTAGTAAFLHA
WDEDAIHRSVLAGLLTQIGMQDEGKVTASTFSHLRGEAKAIAMKRARKRATNEYLGTRGA
RFAIQPSSPLSKKPPAFVMAAELVETNRLWARDVARIDPAWAEELAGDLAKHTYSEPHWS
TKRGAAMAHEKVLLYGVPIVAERRILWGKVNPHEARELFIRHALVQGEWTTHHEFWHANQ
SALADAAEVEARTRTFGLVAGEDELFDFYDERIPDHVVSAAHFDKWWKGAQRTMPNLLTY
TSELLMPDAADVDPARFPDAWPQGELTLPLTYQFEPGADADGVTVHIPLAVLPRVTPDGF
DWLVPGMLAELTTATIRALPKPVRRLLVPAPDVARDVVTWLEAHTPAWEDLARAGDMAES
YRDAFTKATRALRDVTIPADAWQEVDERLPSHLKMTFRIVEYAGGRERVVDESAHLLALK
RSLAPQTADAVRKAVGASSDTRQGAKVAAAAKPTPASFAGGPVAEKGDLQTWPAGLPAGA
LPDVIESDVGGGVVVRGYPGIVAEKGGAALRIAPDARTRDAAHPDGIRRLLLNECALPAK
RVTSRWTSAESLALAASGYRNTDALVADLQWAAVTALTSPGTDDAAAGVRSADAYAAVRE
RVRMALEDEIHRLVALVVPIAEASRTLDAKIRSTTSMALLSTLAEVRALAADLAGDGFVS
RTPPDRLRHLPRYLKAASHRIDKAQSNPARDNELAWKVREMVEELDRARDAATAAGLDAA
RDARIEKARWMIEEFRVSLFAQQLGTDGPVSEKRIRAALATAP
NT seq 4272 nt   +upstreamnt  +downstreamnt
atggcctcctctcgacgcgcagacaaccgcgcgcccgcacgcgctcaggtgggggccacc
tcagcaaagtcgtccgcttccagggccaaggcagccgccgcgcgcgccgccgtcgaggtc
cctccgatcatctatcccgaggaactgccggtcagcgccaggcgcgacgacatcgccgct
gccctccgggatcaccaagtggtgatcgtcgcgggcgagaccggctccggcaagacgacc
cagatccccaagatcgccctcgacctcggccgcggccgcgccgggcagatcggccacacg
cagccgcgccgcatcgccgcacgctccgtcgcggatcgcatcgccgaggaactgggcacc
acactcggcgatatcatcggttaccaggtgcgattcaccgacacgtcctccgagcgcacg
ctcgtcaaggtcatgaccgacggcatcctgctggcccagatccagcgcgaccccgacctg
ctggcctacgacaccctcatcatcgacgaggcccacgagcgctccctcaacatcgacgtg
ctgctgggctacctcaccaacctgctcccccgccgccctgacctcaaactcatcatcacc
tcggcgacgatcgactccgagcgcttcgcgaggcacttcgcgcctggcggccccatcccg
gacgacgcgggggttggggacgacgcaggggcccgcggcgcagacgccgtcaccagtgcg
gacctcgccgacgcccgccccaccgcccccgtcatccaggtcacgggccgcacgtacccg
gtagagatgcgctaccgcccgctcgcaggcgagacgcggggcgaggaacgcgacctcatg
acgggcatcaccgacgcgtgcgacgagctcatgcgcgaggggccaggcgacatcctcgtc
ttcctatcaggggagcgcgagatccgcgatgccgtggaggccctcgaggggcacctgggg
ccgcgcgtgcgcgacgccaagcatccgcaggccttagaactgctacccctctacagtcgc
ctgagcgccgcggagcagcaccgggtcttcgccagccacagccgccgccgcatcgtgctc
gccaccaacgtcgcagagacgtcgctcaccgtccccggcattcactacgtggtagacccc
ggcacggcccgcatcagccgctactccaaggccaccaaggtgcagcgcctacccatcgag
cccatcagcaaggcgagcgccaatcagcgcgcaggtcgcgctggccgcctcgccgacggg
atcgcgatccgcctctacagcgaggatgacttcgcagcgagacccgacttcaccgagccc
gagatcctgcgcacctcgctcgcgtcggtgctcctccagatgatctcggtgggcgtcgtc
tccacgcccgacgaggtggccgccttccccttcgtcgaacctcccgacacccgcgccatc
aaggacggcatccaactgctgtccgacctgggggccgtcaccacgaaccgcggcggcaag
gcgcggcttaccgacgtgggccggaaactcgcgcgcctgcccatcgacccgcgccaagcg
cgcatgatcgtcgagggcgagcgccacggggtggcctacgaggccgcggtgatcgccgcg
gcgttgtcgattcaggacccgcgcgagcgccccagcgacaagcgcgccgaggcggacctc
cagcatcggcgcttctccacccccacatcggacctgttgggctacctcaacctgtgggcg
tacctcagagaccgccagcacgagctatccggcagcgctttcaggcgcatgtgccggtct
gagttcctcaactacctgcgcgtgcgcgagtggcaggacctggtgcagcagctccgccag
gccgccaagccactgggcatccacgtgaaggccagggcggccaagcccatcgctgcggac
gacgccgagggggccaagggcaccacagacaccgccggcaccgccgcattcctgcacgca
tgggacgaggacgcgatccaccgctcggtgctcgctggcctcctcacccagatcggcatg
caagacgagggcaaggtcaccgcgtccaccttctcgcatctcagaggcgaggcgaaggcg
atcgccatgaagcgcgcccgcaagcgcgccaccaacgagtacctcggcacgcgcggcgcc
cgcttcgcgatccagccaagctccccgctgtccaagaagccgccagccttcgtcatggcg
gcagaactcgtcgagaccaacaggctgtgggcgcgagacgtcgcccgcatcgaccccgct
tgggcagaggaacttgctggcgacctggccaaacacacctattcagagccgcactggtcc
accaagcggggcgcggcgatggcccacgagaaggtgctgctgtacggcgtgcccatcgtc
gccgagcgccgcatcctgtggggaaaggtcaaccctcacgaggcccgcgaactgttcatc
aggcacgctcttgtgcagggcgagtggaccacgcaccacgagttctggcatgccaaccaa
agcgcgctcgccgacgccgccgaggtcgaggcccgcacgcgcaccttcgggctcgtggca
ggcgaagatgagctcttcgacttctacgacgagcgcatccccgaccacgtcgtctccgcc
gcgcacttcgacaagtggtggaagggtgcgcagcgcacgatgccgaacctcctcacctac
acgagcgaactgctcatgccggacgcggcggacgttgaccccgcgcggttccccgacgcc
tggccgcaaggcgaactcactttgccgctcacgtatcagtttgagccgggcgccgacgct
gatggcgtcaccgtgcacatccccctcgcagtcctcccgcgggtcacgccggacggcttc
gactggctcgtgcctggcatgcttgccgagctcaccaccgcgaccatcagggcattgccc
aagcccgtgcggcgcctgctggtgcccgctccagatgtcgcccgcgacgtcgtcacgtgg
ttggaggcccacactcccgcatgggaggacctcgctcgtgccggcgacatggccgagtcc
tatcgcgacgccttcacgaaggcgacgcgagcgctccgcgacgtcacgatccctgccgac
gcatggcaggaggtcgacgagcgccttccttcccacctcaagatgacgttcaggatcgtg
gaatacgcagggggacgcgaacgcgtagtcgacgaatcggctcacttgctcgccctcaag
cgctccctcgcgccgcagacggccgacgccgtacgcaaggccgtgggcgcgtcgtccgac
accaggcagggggcaaaggtcgccgctgcagccaagcccaccccagcgtcgttcgctgga
gggccggtggccgagaagggtgacctgcagacatggccggccgggcttcccgcgggtgcg
ctgccagacgtgatcgagtccgacgtgggtggcggcgtcgtggtgcgtggctacccgggc
attgtggctgagaagggcggcgccgcgctgcggatcgcgcccgatgcgcgcacgcgcgat
gccgctcacccagacggcatcagacggctcctgctcaacgagtgtgcgctgcctgctaaa
cgagtgacgtcgcgctggacgagcgcggagtccctggctctcgcggcgtctggctaccgg
aacaccgacgccttggtggccgatctccagtgggcagcggtcacggccctgacctccccc
ggcacggacgacgccgcggccggggtgcgctcggccgacgcctacgcagcagtgcgggaa
cgggtgcggatggcgcttgaggacgagattcaccgcttggtggccctggtggtgccgatc
gcggaggcgtcccgcacgctcgatgccaagatccgctccacgacctcgatggcgctgctt
tctacccttgcggaggtgcgcgcgctcgctgccgacctcgcgggcgatggcttcgtctcg
cgcacaccgccggacaggctgcgccacctccctcgctacctcaaggccgcaagccaccgc
atcgacaaggcgcagtccaaccctgctcgcgataacgagctcgcgtggaaagtgcgcgag
atggtggaggaactcgaccgcgcgcgcgacgccgcgaccgccgccggcctggacgcagca
cgtgacgctcgcatcgagaaggcgaggtggatgatcgaggagttcagggtctccctgttc
gcccaacaactgggcaccgacgggccggtgagcgaaaagcgcatccgcgcagcgctcgct
acggccccgtga

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