Demequina sp. TMPB413: LGT36_012850
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Entry
LGT36_012850 CDS
T08088
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dem
Demequina sp. TMPB413
Brite
KEGG Orthology (KO) [BR:
dem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dem03016
]
LGT36_012850
Enzymes [BR:
dem01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
LGT36_012850
Transfer RNA biogenesis [BR:
dem03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
LGT36_012850
Prokaryotic type
tRNA splicing ligases
LGT36_012850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UPU88119
LinkDB
All DBs
Position
2657624..2658814
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AA seq
396 aa
AA seq
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MEKLNARLLNWASILDPQTKEQAITTSSMPFIYPHLALMPDAHLGLGATVGSVIPTLGAI
IPAAVGVDIGCGMIAVKTQFTKDDVAGKDLGALREQIERSIPLSAGGKNQKIRHTAQARI
EALEALATPTQLARIDGLSRLWRNQLGTLGSGNHFIEVSLDEDDAVWFFLHSGSRGVGNK
IAQHHIAIAHTVMSRYWITLPDKDLAYLVEGSEEFDEYIADLTWAQAFALANREEMMDRV
VDQFERWMGAATGSPVTVEEFTRINCHHNFSQQERHWGKDVWVSRKGAILAREGEWGLIP
GSMGTASYVVQGLGNAVALNSSPHGAGRVFSRTAARKQFTREDLRASMVGIEYKDSDAFI
DEIPAAYKDIDQVMADAADLVEIRHTLRQIVNVKGD
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atggagaagctgaacgctcggcttctgaactgggcatccatcctggatccccagaccaag
gagcaggcgatcaccacctcgtccatgccgttcatctaccctcacctcgcgctgatgccc
gacgcccacctgggtctgggcgccaccgtcggctcggtcatccccaccctgggggcgatc
atcccggccgccgtgggggtggacatcggctgcggcatgatcgcggtgaagacgcagttc
accaaggacgacgtcgcgggtaaggacttgggcgcgctgagggagcagatcgaaaggtcg
atcccgctgagcgccggaggcaagaaccagaagattaggcacaccgctcaggcacggatc
gaggccctcgaggcactcgccacgccgacgcagctcgccaggatcgacggcctgtcgcgg
ctgtggcggaaccagttgggcacgctcggcagcggcaaccacttcatcgaggtcagcctt
gatgaggacgacgctgtgtggttcttcctgcactccgggtccaggggcgtgggcaacaag
atcgcgcagcaccacatcgcgatcgcccacacggtgatgagccggtactggatcaccctg
cccgacaaggacctcgcctacctggtggagggttcggaggagttcgacgagtacatcgcc
gacctcacctgggctcaggcgttcgcgctggccaacagggaggaaatgatggacagggtg
gtcgaccagttcgagcggtggatgggtgccgcgactggttcgcctgtcaccgtcgaggag
ttcacccggatcaactgccaccacaacttctcccagcaggagaggcactggggcaaggac
gtctgggtctccaggaagggcgccatccttgcccgggagggcgagtggggcctcatccct
ggctcgatgggcaccgcgtcgtacgtggttcagggtctcggcaacgccgtggcgctgaac
tcctcgccgcacggggctggtcgggtgttctcgcggacggccgccaggaagcagttcacc
agggaggacctgcgggcctccatggtgggcatcgagtacaaggactccgacgcgttcatc
gacgagatccctgccgcgtacaaggacatcgatcaggtgatggcggacgccgccgacctg
gtggagatccggcacacgctcaggcagatcgtgaatgtgaagggggactaa
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