Demequina sp. TMPB413: LGT36_013475
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Entry
LGT36_013475 CDS
T08088
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
Organism
dem
Demequina sp. TMPB413
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
zf-HC2
Sigma70_r4
Sigma70_ECF
Motif
Other DBs
NCBI-ProteinID:
UPU88232
LinkDB
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Position
complement(2780011..2783052)
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AA seq
1013 aa
AA seq
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MIALWTETSSDPELIAGVRAGDSAAFGVLYERHASAARKVAAQYTNTPTDIDDVVSEAFS
RVLRALQRGDGPDLAFRAYLFTIVRRTGMDLINKGIRTRPREDMSPYESALGYEASSDEP
AMANFEQGLVAHAFSSLPERWQAVLWYTEVEKKSPKEIAPLLGLSANGVAALSYRAREAL
RQAYLQQHLATAEDVNCLAVNSQLGAFVRGGLNKRESSRVDEHVNTCEKCAALVAELQDV
NRGMRGIIAPLVLGAAGISALEGGLPIGGTLGAATGAGAGATAGSGSAVAAGAGGAGTSG
VAAVGTATAVGVGAAFTTGGASGTAATAAATSAATSGAAGTSVLGAAGTSSVASAAAAAG
TASTATTLSSAFAGLGSFLLPAAAVVGVTTMAVAGAGYFGAFESDPPPASVANILPDTSN
TPPPAPNTDDGRGEQPSDEQPPATTPPVEEPEIDPAPEAPGSHGGAAVGTTIGSTPGPTA
GANTGSTTGGSTGGETGGETGGETGGETGGETGGETGGETGGETGGSTGGETGGESGGGT
GGPTPTAVLALGKAPLDYLEITRSAPVIGMALSNQGDAAADTIDAIITLPAGLSFAPPAA
SPAGGGTAVYPQSRLASYMRFAVEGVITSGEWECTLSDDTATADCILPVLPAGSDATLDL
DLVVNSDLAEDAQTTFSVTSGEQHVTYSVLTGLEDLDDEEDVDVDYSTEGQVAAIHVGAT
LLGCGPDADSRCADVMNYVGTSTDSKFNNNNWVMTPLNEAGGIRNSASTQLDLPEGAKVE
YALLEWSANRVATDTMVGELASARLKLPGAADYAAITADNTAEREEGGRLYYRSRLDVTE
LLDADAFEGTWSLADIALPSTMTDGDKTYYGGFALTVIYEDPTLANSRVAIFDGAQWISS
GKAANVQFATSSDANVTVGWTAWEADRALTGDRLDVDDATYMPLQWNGTGAVDGAIGNAA
DSTAFGGKYANTLGVDAKLFRPASVAQGVHTVTVSTAGDNFLLSTLTVTISDE
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgatcgcgttatggacggaaacgtctagcgatccagagctgatcgcaggcgtgcgcgcc
ggcgactcggcggcttttggcgtgctctacgagcgccacgcctccgcagcgcgcaaggtg
gccgcgcagtacacgaacacgcccacggacatcgacgacgtcgtctccgaggccttctcg
cgggtgctgcgtgcactgcagcggggcgatggccctgacctcgccttccgcgcctatctc
ttcacgatcgttcgccgcaccggcatggatctcatcaacaaggggatccgcaccaggcca
cgcgaggacatgtcgccctacgagtcggcgctcggctacgaagcctcttccgacgagcct
gcaatggccaacttcgagcaagggctcgtggcgcacgccttctcttcgctaccagaacgc
tggcaagccgtgctctggtacacggaggtcgagaagaagagtcccaaggagatcgcaccc
ctgcttggcctgtcggccaacggtgtagcggcgctgtcataccgggcacgcgaagcgttg
cgccaggcctacctgcaacagcatctcgcgactgcggaagatgtgaactgcctggcggtg
aactcgcagcttggagccttcgtgcgcggcggcctcaacaagcgagagtcgtcgcgggtc
gacgaacacgtcaatacgtgcgagaagtgtgcggcgctcgtggccgaactccaagacgtc
aacagaggcatgcgaggcatcatcgcgccgctcgtgcttggtgcagcgggaatctctgcc
ctcgaaggtgggctgcctatcggcggaaccctcggcgctgcgaccggcgctggcgcgggt
gccaccgccggctctggttcggcagtggctgcgggcgctggcggcgcaggtacgtctggc
gtggccgcggtcgggaccgccacagcggtcggcgtcggtgccgccttcaccaccggtggg
gcgagtggcactgcggccactgccgccgccacctctgcggcaacctctggcgccgcaggc
acctcagttctcggcgccgcaggcacctcctctgttgccagtgcggcggcggccgccggc
actgcaagcaccgcgacgaccctttccagtgccttcgcgggacttggaagttttctgctc
cctgcagcggcagtcgtcggagtcaccaccatggccgtcgccggggcaggctactttggc
gctttcgagagtgacccgccgcccgcgtctgttgccaacattctcccggacacctcgaac
acgccgccgccggcgcccaacacggacgacgggcgcggtgagcagccgtccgacgagcag
ccgccagcgaccacgccacctgtcgaagaaccagagatcgatccggcccctgaggctccc
ggcagtcacgggggcgcagcggttggcaccacgattggttcgacccccggtccgacagct
ggcgcgaacaccgggtcaacgaccggcggttcgactggcggtgagaccggcggtgagacc
ggcggtgagaccggcggtgagactggcggtgagactggcggtgagaccggtggtgagact
ggtggtgagaccggtggttcgactggcggtgagactggcggtgagtccggtggtggcacc
ggcggcccgacgccaacggccgttcttgcacttggcaaggccccgctggactacctagag
atcacccggtcggcgcccgtcatcgggatggcgctatccaaccaaggggacgcggccgca
gacaccatcgatgcgatcatcacccttcccgccggtctgagcttcgccccgcccgcggcg
agccccgccggtggcggcacggcggtgtacccgcagtcgcggttggcgtcctacatgcgc
ttcgccgtcgaaggcgtcatcacgagcggcgaatgggagtgcacgctgagcgatgacact
gccaccgcagactgcatcctgccggtcctgcctgcaggcagcgacgccactctcgacctt
gacctggtggtcaactctgacctcgcggaggacgcgcagaccacgttctccgtcacctcc
ggcgaacagcacgtcacctacagcgtcctgaccggtctggaagatctggacgacgaagag
gacgtggacgtcgactactccacggagggccaagttgccgcgatccacgtgggtgccacg
ctccttggctgtggtccggatgcggactcgcgttgcgcggacgtcatgaactatgtcgga
acctctaccgacagcaagttcaacaacaacaactgggtcatgactccgctgaacgaggca
ggcggcatccgcaattccgcctccactcagcttgacctgccggagggcgccaaggtcgag
tacgcacttcttgagtggtcggccaaccgggtcgcgacggacacaatggttggcgagctc
gcaagcgcacgtctcaagctccctggcgccgcggactacgctgcgatcacggcggacaac
acggcggaacgggaggaaggcggcaggctgtactaccgctctcgcctggacgtcacggag
ctcctggacgccgacgccttcgaaggcacctggtcgcttgccgacatcgctctcccatcg
accatgaccgatggagacaagacctattacggcggctttgcgctgacggtcatctacgaa
gacccgaccctggcaaactcgcgagtggcgatcttcgatggagcgcagtggatctcctct
ggcaaggcggcgaacgtgcagttcgccacgtcgtcggacgccaacgtcaccgtcggctgg
actgcgtgggaagctgaccgcgccctcaccggggaccgcctcgacgtcgacgatgccacc
tacatgccactccaatggaacggcacgggtgccgtcgatggcgccatcggcaacgcggcg
gactccactgcgttcggcggcaagtacgccaacacgctcggcgtcgacgcaaagttgttc
cggccagccagcgtcgctcagggcgtccacaccgtgaccgtcagcaccgctggcgacaac
ttcctgctgagcaccctcacggtgacgatctccgacgagtag
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