Candidatus Doolittlea endobia: MHIR_DE00210
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Entry
MHIR_DE00210 CDS
T04480
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
den
Candidatus Doolittlea endobia
Pathway
den03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
den00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MHIR_DE00210 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
den03019
]
MHIR_DE00210 (rne)
03009 Ribosome biogenesis [BR:
den03009
]
MHIR_DE00210 (rne)
Enzymes [BR:
den01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MHIR_DE00210 (rne)
Messenger RNA biogenesis [BR:
den03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MHIR_DE00210 (rne)
Ribosome biogenesis [BR:
den03009
]
Prokaryotic type
rRNA processing factors
MHIR_DE00210 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
Motif
Other DBs
NCBI-ProteinID:
CUX96534
UniProt:
A0A143WRZ3
LinkDB
All DBs
Position
I:complement(240422..243640)
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AA seq
1072 aa
AA seq
DB search
MKRMLINATQQEELRVALVEGQRLYDLDIESPGHEQKKANIYKGKIIRIEPSLEAAFVDY
GAERHGFLPLKEISSEYFPPQYSTYARPNIRDVLRESQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRVGGISRRIEGDDRIELKEVLSSLNLPDGMGLIVRTAGVGKSAEAL
QWDLTFRCKHWQAIKKAAEERPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLDLA
KEHIVSLGRPDFTSKIKLYRGEIPLFSHYQIESQIESAFQREVRLPSGGSIIIDTTEALT
SIDINSARSTRGGDIEETAFNTNLQAANEIARQLRLRDLGGLVVIDFIDMTPVRHQREVE
NCLRESVRQDRARIQIGRISRFGLLELSRQRLSPSLGESTHHVCPRCGGTGAIRDNASLS
LSILRLIEEEALKDNTHEVHAIVPVPIASYLLNEKRAAVNAIEKRQGGVRAIIVPNHQMQ
TPHYAVLRVRKGEEVLTLSYLLPQLHEAEMTQSSEEPSSDRKHSEQPALSAFVIHNSPLI
SEKPATADANRMPTAPTFSTASASTSRSLFGRLVDGFKSLFTPALQQETEAADAVVMETP
VEAGTTHHQESQNRCNQLRQRGRRDCRDRRDGPRRKYSQTLRETGIVSDLVKEKPQKAQL
YPRRESCQDRPEEQEIKAQPAPAIASNGSNTYDEGNKTIQVRLRRQCRVLNHKIHGDERP
ILSTTAQTASVESATAAFNTAIENQDNNDCNDVLQDKNGISLNTSNANSGRNSEAFLPTR
ARRSPRYLRVNSQRRRRYRDRCCPLSSPVPLTSAVVSPEIASGKVWISYPVTAIDRIEKD
VFADTTGIPQITEVVAIDEQQLQTAFSARKSGRPTTVSNEVPQVVIATEDHQVAQRRPVQ
SELTFDSNVMVPMAVDLSQPNNGDALDHLPVNLRVEAQVCSAALSQPVASYKEERFASLA
PASTDEARHLEKTVEATTCSDATFLQIGQTALCTAVKSVSLHTPKTPNTRFKHHASAPIT
KAPAPAYKASLLPASSWKQSDYCFNDRGTAGNHTADHQATVLKTRPDKPDPL
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcaacaggaagagttgcgtgtcgctctggtagag
ggccagagactgtatgacctagatatcgaaagccctggccatgaacaaaaaaaagccaat
atttataagggtaaaatcatccgtattgaacccagcctggaagcagcgtttgtggattat
ggcgcagaacgccatggtttccttcctcttaaagaaatttctagcgaatactttccacct
caatattctacttacgctagaccaaatatcagggacgtacttcgagaaagccaggaagtt
atcgtacaggttgataaagaagaacgagggaataaaggtgcggcactaactacatttatc
agtctagccggtagttatctggtgctaatgccgaataatccgcgagtgggcggaatatca
cgccgtatagaaggcgatgatcgcatcgagctgaaagaagtcttgtcctcccttaatctt
ccagatggcatgggacttatcgttcgcaccgccggtgtcggaaagtcggctgaggcgctt
caatgggatctaactttccgttgcaaacattggcaagctattaaaaaggccgctgaagaa
cgcccagcgccattcttgatccatcaggaaagcaatgttattgtccgtgctttccgagat
tatttgcggccggatatcggcgaaattctgatcgataatcctaaagtgctagatctagca
aaagagcacattgtttcattaggtcgccctgattttactagtaaaattaagctttacaga
ggagaaattcctttgttcagccattaccagatcgaatcacagattgaatctgcctttcaa
cgtgaagtgcgcctgccttccggtggctccattatcatcgatactaccgaggcgttgact
tccattgatatcaactccgcgcgctcaacccgcggtggtgatattgaagaaactgctttc
aataccaacctgcaagcggcgaatgaaatcgcccgtcagctgcgtctgcgagatttgggc
ggtttagttgtcattgattttatcgatatgacgccagtgcgccaccaacgcgaggtggaa
aattgcttgcgagaatcggttcgtcaagaccgtgctcgcatccaaattgggcgcatttct
cgcttcggcttactagagctatcccgtcagagactgagtccgtcattgggtgaatcaacc
catcacgtttgtccccgctgcggcggtaccggcgccattcgcgataatgcatccctttct
ctctctatacttcggctgattgaagaagaagcgctaaaagataacacacatgaagtgcat
gctattgtgccagtacctatcgcctcttatttgctgaacgaaaaacgcgcagctgttaac
gccattgaaaagcgtcaaggcggcgtccgggcgattattgtaccgaatcatcaaatgcaa
accccgcattatgcagttctgcgtgttcgaaaaggtgaagaggttcttactttaagttat
ttgttgccgcagttgcatgaagcagaaatgacccaatcctcagaggagccttcctctgat
cgtaaacattctgaacagccggcgttgtcggcatttgtaatacataattcaccgttgatt
agcgaaaaacccgctacggctgatgcgaatcgtatgccgacagcgcctaccttcagcaca
gcaagcgccagcacatcgcgtagcctgttcggtcgtctagttgacggttttaaatctctc
ttcacgcctgcgctacaacaggaaactgaagctgccgatgcggtagttatggagacaccg
gttgaagcgggaaccacgcatcatcaggaaagtcagaatcgttgcaatcaactccgacag
aggggccgccgtgactgccgtgatagacgtgacggtccgcgccgcaaatattcacagact
ctacgtgaaacaggcatagtaagtgatcttgtcaaagaaaagccacaaaaagcgcaactc
tacccacgtcgcgaatcatgtcaggatcgacctgaagagcaggaaatcaaagcgcaacct
gctcccgcgatagcttcaaacggcagtaacacctatgacgaaggcaataagacgatccaa
gttcggctacgccgtcagtgtcgcgtattaaatcataaaattcacggcgacgagcggccc
atcctttctaccaccgcacagactgcctccgtagaaagcgctactgccgcgtttaataca
gcgatagaaaatcaggacaataatgattgtaacgacgtcctgcaagacaaaaatggcata
tcgcttaataccagcaatgctaattctggacgtaacagtgaggcgtttttgcccacccgt
gcacggcgttccccacgatatctgcgtgtaaacagccagcgccgtcgccgttaccgcgat
agatgttgtccactctcgtcgcctgtaccgcttactagcgcggtcgtatcgccggaaata
gcctctggtaaagtgtggattagttatcctgtcacagccatcgatcggattgaaaaagac
gtgtttgccgatacaactggtattccccagattacagaagtagtcgctattgatgaacag
caactacagacggcattttccgcaaggaaatcaggcagaccgacgacggtcagcaatgag
gtgccgcaggtggttattgctacagaagatcatcaagtagcacaacgacggcctgtgcaa
tccgagttgaccttcgatagtaacgtaatggtgccgatggctgtagatctctctcaacct
aacaatggggatgcactggatcacttgccggttaatctgagagttgaagcgcaggtgtgt
tccgccgcgttatctcagcctgtcgcttcatacaaagaagaacgctttgctagcttggcg
ccggcatcaacagatgaggcgcgacatcttgaaaaaacggtggaagccactacatgttct
gatgctacatttctccaaatcggacaaactgcactttgcactgcagtcaaaagcgtttca
cttcacacgccgaaaacccctaatacgcgctttaagcatcacgccagcgcaccgataacc
aaagcacctgcgccggcctataaggcctctctgttaccggctagcagctggaaacagtcg
gactactgtttcaacgatcgtggcactgctggaaatcacaccgcagaccatcaggcaact
gtattaaaaacccgtccggataaaccggatccgttataa
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