Candidatus Doolittlea endobia: MHIR_DE00274
Help
Entry
MHIR_DE00274 CDS
T04480
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
den
Candidatus Doolittlea endobia
Pathway
den03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
den00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MHIR_DE00274 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
den03021
]
MHIR_DE00274 (rho)
03019 Messenger RNA biogenesis [BR:
den03019
]
MHIR_DE00274 (rho)
Transcription machinery [BR:
den03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
MHIR_DE00274 (rho)
Messenger RNA biogenesis [BR:
den03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MHIR_DE00274 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
AAA_25
AAA_22
AAA
Motif
Other DBs
NCBI-ProteinID:
CUX96588
UniProt:
A0A143WS92
LinkDB
All DBs
Position
I:complement(320410..321669)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTALKNTPVSELVILGEDMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGLGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHLDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIVLLDSITRLARAYNTIVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTIQEELQKMWILRKIIHPMSEIDAMEFLINKLAMTKTNEEFFVMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaaccttaccgcattaaaaaatacgccggtttcagaacttgtaatcctcggcgaggat
atggggctagaaaacctggcccgcatgcgtaaacaagacattatctttgctatcctcaag
cagcatgctaagagtggcgaagatatcttcggcgatggtgtgctggaaattttgcaggac
ggatttggttttctccgttccagcgacagctcctaccttgcaggcccagatgatatctat
gtttctcctagccagatcagacgcttcaacctacgcaccggtgacaccatttcagggaag
attcgcccaccaaaagaaggagagcgttactttgcgctactaaaagtgaacgaagttaac
tatgataagccggaaaatgcacgcaacaagattttatttgaaaacctaacgccactgcat
gctaattcacgtttgcgcatggaacgcggcaacggctccacagaagatctgaccgcgcgt
gttttagatctagcttcacctataggccttggccagcgtgggttaattgtggcgccgccg
aaagctggtaagaccatgctgcttcagaatattgctcaaagcatcgcttataaccatctt
gactgtgtcttaatggttctgttgattgacgaacgtccggaagaagtaaccgaaatgcag
cgtttggtaaaaggtgaagtgatcgcttcaacctttgacgagccggcatctcgccatgtt
caggtcgccgaaatggtgattgaaaaagctaaacgtctggttgaacataagaaagacgtt
attgtcctgctagattctattactcgtctggcgcgtgcttataacactatagtgcctgct
tctggcaaggtattgactggtggtgtggacgctaatgccttacatcgccctaagcgtttt
ttcggtgcagcgcgcaatgtggaagaaggtggaagcctaaccatcatcgctaccgcgctt
atcgatactggctctaaaatggacgaagtaatttacgaagagtttaagggaacgggcaat
atggaactgcacctatcgcgtaaaatcgccgagaaacgcgttttcccagcgattgattac
aatcgttcggggactcgtaaagaagaattgctcaccattcaagaagagctacagaaaatg
tggatcctgcgaaaaattattcatccaatgagtgaaatcgacgcaatggaattcttaata
aataagttagcgatgacaaaaactaatgaagaatttttcgttatgatgaaacgttcgtaa
DBGET
integrated database retrieval system
