Candidatus Doolittlea endobia: MHIR_DE00378
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Entry
MHIR_DE00378 CDS
T04480
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
den
Candidatus Doolittlea endobia
Pathway
den03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
den00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MHIR_DE00378 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
den03021
]
MHIR_DE00378 (rpoB)
03400 DNA repair and recombination proteins [BR:
den03400
]
MHIR_DE00378 (rpoB)
Enzymes [BR:
den01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MHIR_DE00378 (rpoB)
Transcription machinery [BR:
den03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MHIR_DE00378 (rpoB)
DNA repair and recombination proteins [BR:
den03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MHIR_DE00378 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
DUF8806
DUF7384
Motif
Other DBs
NCBI-ProteinID:
CUX96666
UniProt:
A0A143WS69
LinkDB
All DBs
Position
I:complement(445994..450022)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRVRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLIIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVVVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDHLFVRIDRRRKLPASIILRALNYSTSQILDTFFEKVIYEICDNKLQMD
LQPERLRGETASFDIEANGIVYVEKGRRITARHIRQLEKSGVTQITVPVEYIVGKVVVKD
YFDEKTGKLIVPANMALTLDLVDKLKQAGYKHIETLFTNDLDHGAYISETLRIDPTNDRL
SALVEIYRMMRPGEPPTREAAENLFENLFFSEERYDLSAVGRMKFNRSLMREDIEGSGIL
NKNDIIEVIKKLINIRNGKGEIDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGALDTLMPQDMINSKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEARDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVQDGVVT
DEIHYLSAIEEGNFVIAQANTNLGDNGRFIDDLVTCRSKGESSLFSRNQIDYMDVSAQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRTDKPLVGTGMERAVAVDSGVTVVAKR
GGTVQYVDASRIVINVNADEMYPGEAGIDIYNLTKYIRSNQNTCINQTPCVSLCEPVERG
DVLADGPSTDLGELALGQNVRIAFMPWNGYNFEDSMLVSERVVQEDRFTTVHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYVGAEMTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALAIEDMQLKQAKKDL
TEELQILETGLFARIHDVLISGGLAKEQLDKLTRESWLALGLVDEEKQNQLEQLAEQYNE
LKREFEKKLEAKRHKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDEHGVPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQHEKVPK
LRAFIQKAYNLGDDIRQKLNLNTFSDEEVLRLAENLKKGLPLATPVFDGAKEKEIKELLQ
LGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDVNGRTKMYKNIVDDNHMMEPGMP
ESFNVLLKEIRSLGINIDLEED
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgaaaaaaaacgtgttcgtaaggactttggaaaacgtccgcag
gttttggatgttccctatctcctatccatccaacttgactcgtttcagaagtttattgag
caagatcctgaaggtcagtacggtctggaagcggctttccgttccgtattcccaatacag
agctacagcggcaactctgaactacaatatgttagttaccgccttggcgaacctgtcttt
gatgtcaaagaatgccagatccgcggtgtgacgttttccgcaccgttgcgcgtcaaattg
cgccttattatttacgaacgcgaagcgccagaaggtacagtaaaagacatcaaggaacag
gaagtctatatgggagaaatcccgcttatgactgataacggcacttttgtcatcaatggc
acagaacgtgttgttgtttcccagttacaccgcagtcctggcgtattttttgacagcgac
aagggtaaaacgcactcttcaggtaaagtgttatacaatgcgcgtattattccataccgc
ggctcctggctagatttcgagtttgatccaaaagaccacttattcgtccgtatcgaccgc
cgccgaaaattaccggcgagcatcattttgcgtgcgttaaattacagcaccagtcagatc
ttggatacattcttcgagaaagtgatttatgaaatttgcgataacaagctgcagatggat
ctgcagcctgagcgcttgcgtggtgaaaccgcttcatttgatattgaagctaacggcatc
gtctatgtcgaaaaaggccgtcgcatcaccgcgcgtcatattcgacaattggaaaaaagc
ggcgttacacagatcacagtgcctgtcgaatatattgttggcaaagtagtggtaaaagat
tactttgatgagaagactggcaagcttatcgttccagctaacatggcgctgacattagat
ctagtggacaagctgaaacaggctggctacaaacatattgaaacattgttcacaaacgat
ttggatcacggtgcctatatttctgagacgctgcgtattgatccaactaacgatcgtctt
agcgcgttggtggaaatttaccgtatgatgcgtcccggtgagccaccgactcgcgaagcg
gccgaaaatttgtttgaaaatctgttcttttcggaagaacgttacgatctttccgcagtt
ggccgaatgaagttcaaccgttcgctgatgcgtgaagacattgaaggttccggtatcctc
aacaaaaacgacatcattgaagtgataaaaaaactcatcaatatccgtaatgggaaaggt
gaaatcgacgatattgaccacctgggcaatcgccgtattcgttcggtgggtgaaatggcg
gagaaccagttccgcgtcggtctagttcgtgtggaacgtgcggtaaaagaacgtctgtct
ttaggtgctctagatactttgatgccgcaggatatgatcaattctaaaccaatttcagca
gcagtgaaagaattttttggttcgagccaactatctcagttcatggatcagaacaacccg
ctgtccgagattacccataagcgtcgtatctccgcgttaggaccaggtggcttaacccga
gaacgcgcgggatttgaagcgcgtgacgtgcatccgactcattacggacgtgtttgtccc
attgagactccggaagggccgaacattggtctgatcaactcgctgtccgtatatgcacaa
accaacgagtacggtttcctagaaacaccttaccgtcgcgtgcaagacggcgtagttact
gacgaaattcactatctgtcggcgattgaagaaggtaactttgttatcgcgcaagccaac
actaacctcggagacaatggccgtttcattgacgatttggtgacatgccgtagtaaaggc
gaatcgagtctattcagccgaaatcagattgattatatggacgtttccgctcagcaggta
gtttctgtcggtgcttcgctgattccattcctggagcacgacgacgctaaccgcgccttg
atgggcgcgaacatgcaacgtcaggcggtaccaacattgcgtaccgacaagccgctggtt
ggaacaggtatggaacgtgcggtcgccgttgattccggcgttaccgtcgtagcgaaacgc
ggcggaacggtgcagtacgtggatgcctcgcgtattgtgattaacgttaacgcagatgag
atgtatcctggcgaagcgggcatcgatatttacaacttgactaaatatatccgttctaac
caaaacacttgcatcaaccagacgccttgcgtttcgctgtgtgagccagtcgagcgtggt
gacgtgctagctgacggtccgtctaccgatctgggtgaacttgcgctggggcagaatgtg
cgtatcgcatttatgccgtggaacggctacaactttgaagattcaatgctagtttccgaa
cgcgtagtgcaggaggatcgttttaccactgtgcatattcaggaactagcgtgcgtgtct
cgcgacacaaaactaggccctgaagaaattaccgctgacatcccgaatgtaggtgaagcc
gcgctctccaaactggatgagtccggtatcgtctatgttggcgcagaaatgaccggcggc
gatattttagtaggcaaagtgacgccgaaaggggaaacacaactgacgccagaagaaaaa
ctgctgcgcgctatcttcggtgaaaaagcttccgacgtgaaagattcatctctgcgtgta
ccaaatggtgtttccggtaccgttattgatgtgcaggtatttacccgcgatggcgtggag
aaagacaagcgggcgttggcaatcgaggacatgcagcttaagcaggccaaaaaagacctc
accgaagaactacagattcttgaaaccggtttgtttgcccgtattcacgatgtactgatt
tccggcggcctagcaaaagagcagctggataagctgactcgagagagctggttggcacta
ggcctggtcgatgaagagaaacaaaaccagcttgagcagcttgctgagcagtataatgaa
cttaaacgcgaattcgaaaagaaactagaagcaaagcgccataaaattactcaaggagat
gacctggcgccaggtgtgttgaaaattgttaaggtgtatctagctgtgaaacgtcagatt
caaccaggcgacaaaatggcaggtcgtcacggtaacaaaggtgttatttccaagatcaac
ccgatcgaagatatgccttacgatgaacatggtgtgccggtggatatcgttttgaaccca
cttggtgtaccgtctcgtatgaacatcggacagattttagaaacccatttaggcatggcg
gcaaaaggtatcggcgataaaattaacgccatgctaaagcagcacgaaaaggtgccaaaa
ttacgcgcgtttattcagaaggcgtacaacttaggtgacgatattcgccagaaattaaat
cttaatactttttccgatgaggaagtgctacgtttagcggaaaatctaaagaaaggtcta
ccgctcgccacgccggtatttgacggcgccaaagaaaaagaaattaaggagctgctgcag
cttggtggcctgccgacttccggtcagattaccttgtttgatggccgcactggcgaacaa
ttcgagcgccaggttacggtgggatatatgtatatgctaaaactaaaccatctcgttgat
gacaagatgcatgcgcgttctactggctcttacagcctggttacccagcaaccgctaggc
ggaaaagcgcaattcggcggccagcgcttcggggaaatggaagtgtgggcgttggaagct
tacggcgcgtcctacaccttacaggaaatgcttaccgttaaatcggatgatgttaatggt
cgcaccaagatgtataaaaacatcgtggatgataatcacatgatggaaccaggtatgcca
gaatctttcaacgtcttgttaaaggaaatccgttctctaggcatcaatatcgatctggaa
gaagactaa
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integrated database retrieval system
