Candidatus Doolittlea endobia: MHIR_DE00439
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Entry
MHIR_DE00439 CDS
T04480
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
den
Candidatus Doolittlea endobia
Pathway
den03420
Nucleotide excision repair
den03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
den00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MHIR_DE00439 (uvrD)
03430 Mismatch repair
MHIR_DE00439 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
den03400
]
MHIR_DE00439 (uvrD)
Enzymes [BR:
den01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MHIR_DE00439 (uvrD)
DNA repair and recombination proteins [BR:
den03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MHIR_DE00439 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
MHIR_DE00439 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_22
AAA_11
AAA_16
Motif
Other DBs
NCBI-ProteinID:
CUX96712
UniProt:
A0A143WSK9
LinkDB
All DBs
Position
I:complement(519846..522008)
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AA seq
720 aa
AA seq
DB search
MDVSDLLNNLNDKQLEAVAAPRGNLLVLAGAGSGKTRVLVHRIAWLLSVKKCSPYSIMAV
TFTNKAAAEIRHRIEHLMGSSQSGMWIGTFHGLAHRLLRVHYQDANLPQDFQILDSEDQL
RLLKRIIRAMNLDEKQWPSRQAMWCIRDKKDKGLRPQYAESYSNPVEATWQRIYLSYQEA
CDRAGLVDFAELLLRSHELWLNKLHILCYYRQRFTNVLVDEFQDTNQIQYAWLRMLAGDN
GNVMIVGDDDQAIYGWRGAQIKNIQRFLDDFPGAQTILLEQNYRSTSNILQAANTLISHN
DGRLGKNLWTEVASGEPITLYCAFNEADEARFVVHRIKVGQEQGRALKDFAILYRNNTQS
RVLEEALLQTGLPYRIYGGVRFFERQEIKDAIAYLRLIANRSDDVAYERVVNTPTRGLGD
RTLDRVRQVACNRQITLWQSSRALLAERVLVGRAAGALQRFLELIDTLEKETAGLSLCVQ
TDQVIKKSGLWCMYEQEKSEKNQVRIENLKELVTATRQFSHNDNDKESDFLPLQAFLSHA
ALEAGEGQVNTYQDAVHLMTLHAAKGLEFSQVFIVGMEEGIFPSQMSLDDDERLEEERRL
AYVGVTRAIDKLTITYAKTRWLYGKEVSHRPSRFVSELPTACVEELQLRSNVTRLTSRLH
ISVPLNEKDFTLGQRVRHPKFGEGTVVNLEGSGKHIRLQIAFQGQVFKWLVADYARLETI
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggatgtttctgatttgctcaacaacctaaacgacaaacaactagaagctgtagcggcg
ccgcgcggtaatttgttagttctggccggtgctggaagtggaaaaacacgagtactggtg
caccgtatcgcctggctgctatcggtgaaaaaatgctcaccttattcgataatggcagtc
acttttactaacaaagcggcggctgaaatacgccatcgtatcgaacatctgatgggctct
agccagagcggcatgtggatcggtacctttcatgggttggctcatcgcttattgcgtgtc
cactatcaggacgctaatctgccgcaggattttcagatacttgatagtgaagatcaactg
cgcttgttaaagcgcattatccgtgccatgaatctggatgaaaaacagtggccatcgcgc
caggcaatgtggtgtattagagacaaaaaagacaagggacttcgtccgcagtatgcggaa
agttacagcaatccggttgaggcgacctggcaacgcatctatctgtcctatcaggaagca
tgtgaccgcgccgggctagtagatttcgctgagctgttgctgcgttctcatgaattgtgg
ttgaacaagctgcatattttatgttactatcgccaacgttttaccaatgtccttgtggat
gaattccaggatactaaccaaatccaatacgcttggcttcgcatgctcgccggcgataat
ggtaatgtgatgatcgtcggagacgatgatcaggcgatttatggctggcgtggagcacag
ataaaaaatattcagcgttttctggatgattttcccggcgcgcagaccattctattggaa
caaaattatcgttccaccagcaatatcttacaagccgctaatacccttatttcccataac
gatggccggctagggaaaaatctgtggaccgaagtcgcttcaggcgaaccgatcactctt
tattgtgcctttaacgaagcggatgaagcgcgctttgtggttcatcgcatcaaggtgggt
caggagcagggtcgggcgctcaaggacttcgccatcctctatcgtaacaacactcagtcg
cgcgtgctggaagaggcgttgctgcaaactgggttgccttatagaatttatggcggtgtg
cgttttttcgagcgtcaagaaatcaaggatgcgatcgcttatttgcgccttatcgctaat
cgcagcgacgacgttgcctatgagcgagtggtcaatacgcctacgcgtggccttggagat
cgtaccctagatagggtacgacaagtcgcctgtaaccgtcagattacgctgtggcaatcg
agtcgagctctactcgcagagcgcgtgctagtcggtcgcgctgccggcgctctacaacgg
tttttagagctgattgatacactggaaaaagagacagcggggctatcattgtgtgtgcaa
accgatcaagtgataaaaaagtccggcctatggtgcatgtatgaacaggaaaaaagcgaa
aaaaatcaagtgcgtatcgagaacttgaaagaattggtcactgctacccgtcagtttagt
cataacgataacgataaagagtcagattttctgccgttgcaagcgttcttatctcacgcc
gcactggaggctggtgaaggccaggtcaacacctatcaggatgcagtgcatctaatgacg
ctgcatgccgccaaaggattagaattttctcaagtgtttattgttggtatggaagaaggc
attttccccagccagatgtcgctagacgacgatgagcgtttggaggaagaacgccgtctg
gcgtatgtcggcgttacccgtgcgatagataagctaaccattacttatgcgaaaacccgc
tggctatacggaaaagaagtttcccaccgaccatcgcgtttcgttagcgaactgccgaca
gcttgtgttgaagaactacaactgcgttcaaatgtaacccgcctgactagccgactacac
attagtgtacctttaaacgaaaaggattttacccttggacagcgagtgcgtcatccaaaa
tttggcgagggtacggtagttaatctagagggaagcggtaaacatatccgtctgcaaatt
gcatttcaaggccaggtttttaaatggttagtggcggattacgcccgactggaaaccatt
tga
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