Candidatus Doolittlea endobia: MHIR_DE00464
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Entry
MHIR_DE00464 CDS
T04480
Symbol
recB
Name
(GenBank) RecBCD enzyme subunit RecB
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
den
Candidatus Doolittlea endobia
Pathway
den03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
den00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
MHIR_DE00464 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
den03400
]
MHIR_DE00464 (recB)
Enzymes [BR:
den01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
MHIR_DE00464 (recB)
DNA repair and recombination proteins [BR:
den03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
MHIR_DE00464 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_25
AAA_30
PDDEXK_1
AAA_11
HTH_ParB
Motif
Other DBs
NCBI-ProteinID:
CUX96726
UniProt:
A0A143WSC7
LinkDB
All DBs
Position
I:554764..558378
Genome browser
AA seq
1204 aa
AA seq
DB search
MNLSRRISYLSAVKALIAQHKGMNLLKTLESLDPMFLPLHGVRLVEASAGTGKTYTLVAL
YLRLLLGLSGETAFPRLLSVEEILVVTFTEVAAEELRARIRDNIRRLRLDCMRGKSEDPL
LAVVLDRLDNYKLTALHLLAAEQQIDRAAIFTIHGFCQRMLNYNAVESGMLFQQTLLKDE
TLLRQQVSADFWRRHCYPLPLEVARIVQQYWEGPEDLLSELVPYLEGELPEVCDPPALSE
SILARHARIIASIDNLKQQWRAATAKISASFDTYKLDRRVYNSKNLSSWLAKINFWAEQP
TVDYQLPDELERFTSAVLVEKTIAGDPPRHALFSAVQTFCQNRTSLRDLIFMMALAEIRQ
ALEQEKWRRAELGFDDLVSRLDRALTGRSGAALAKSVRLRYPVAMIDEFQDTDPRQYRIF
HRVYSGKQDCALLLIGDPKQAIYAFRGADIFTYIRARREIDTHYTLNTNWRSAPGMVNAV
NQLFQSVPSPFIFSAIPFFPVTAAENNTRLRLVVEQQSQPAMRVWLQPGAGVSVSEYQQY
MAQQCATSIRDWLHAASEGEAWLESCRERQPLQASDITVLVRNRYEAALIRDALAMLTIP
SVYLSNQDSVFNTQEARELLWILQAVLTPEKDTVLRTALATSQLGFDAVAIDTLNKDERR
WEERVVEFVGYRERWQKSGVLPMLRQMMKNYHIAENFLASQGGERRLTDLLHLGELLQQA
STQLGNEYALVRWFRLQIASPNLQMENQQLRLQSDRQLVKIITIHKSKGMEYPLVFLPFM
ADFRIQKRPLFHDRETYVAWLDLRVTQDSLRLAEEERLAEDLRLLYVAVTRSIYHCSFGI
APLCRGNRKKTGASNLHLSALGYLIQQGQSGDADNLRKCLAELVNRADGDIMLCEARVAA
GKPLTPAAAPAQALSARHFPELLHDPWRVSSYSELQRHSSSAVMELQPLLNIDAAWKDNQ
QKMLQLTPHSFPRGVAPGTFLHGLLKTLDFNQPLDLQWLNKQLAQQGIDAVWLPVIADWM
EKIITIPLDGNSFSLVQLTHDSRQAELQFYLSIDAVVQARDLDQICKHYDLLSARCSPLD
FPQIKGMLQGFIDLVFRWHDRYYLVDYKFNWLGETSASYTQLTMEQAMVAHRYDLQYQLY
TLALHRYLRHRLADYYYSRDFGGVYYLFLRGIDATRPGNGVFYCRPDSALIDELDALFTG
ACNQ
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaagccgacgcatctcttacctcagcgctgtaaaagcgctgatagcgcaacat
aaaggaatgaacttattgaagaccttagaaagccttgaccccatgttcttaccccttcat
ggggttcgccttgtcgaagcgtcggcgggtacgggaaaaacttatactcttgttgcgctt
tatctgcgtttgcttctcggactgagcggtgagacagcatttcctcgacttttaagcgtc
gaagaaatattggtagtaacctttactgaagtcgccgcagaagagctacgggcccgtatt
cgtgacaatatccgtcgccttcggctagattgcatgcgaggtaaaagcgaggacccgcta
ctggcggtagtattagatcggcttgataactataagcttaccgctctgcatttgctggcg
gcggagcaacaaatagacagggcggcaatatttactattcatggattttgccagcgtatg
ttgaactataacgccgtcgaatcaggcatgctgtttcagcagactcttctgaaagatgaa
acactccttcgccagcaagtaagtgctgacttttggcgccgtcattgctatccgttgccg
ctagaggttgcgcgtatagtacagcagtactgggaagggccggaagacttactgtcggaa
ttagtgccctatttggaaggtgagttgccggaagtatgcgatccaccagcgttaagtgag
tctatcctggcacggcatgcgcgtatcattgccagtattgacaacctgaagcaacaatgg
cgcgctgcaacagcgaaaatctcagcgagctttgacacatacaaactcgaccgtcgtgtt
tataacagcaaaaatctgtcgtcttggctagcgaaaatcaatttttgggcggagcagcct
acagtcgattatcagcttcctgatgagcttgaacggtttacaagtgcggtattggtcgaa
aaaacgatcgccggcgatccgcctcgccatgcgctattttctgcggtgcagactttttgt
cagaacaggacgtctttgcgcgatctgatattcatgatggctctggcagagatacgtcag
gcgcttgaacaggaaaaatggcggcgggcggagctggggttcgatgacttggtaagtcgt
ttggatcgggcgctaaccggacgtagtggggcagctttagctaaatcggtgcgcttacgt
tatccagtagcgatgattgatgagtttcaggacaccgatcctcgacaatatcgtattttc
catcgtgtgtacagcggcaaacaagattgtgctctactgttgataggcgacccgaaacaa
gcgatctacgcgtttcgcggcgctgacatttttacttatatacgcgccagaagagaaata
gatactcactatacccttaatactaactggcgctcagctccagggatggtcaatgcagtg
aatcagttgttccaaagtgtgccgtctccgtttattttcagcgcgatccccttttttccg
gtaacggctgcggaaaacaatacccgtttgcggttagtcgttgaacaacaatcacagccg
gcaatgcgcgtctggctacaacctggagccggcgttagtgtaagtgagtatcaacagtat
atggcgcagcagtgcgccactagcatccgcgattggcttcacgccgcgagtgagggagaa
gcctggttggaaagctgtcgagaacgacagccactacaggcgtcggatattacggtgtta
gtacgcaaccgctacgaggcggcattgatacgcgatgcgctggcgatgctgacgatcccg
tcggtgtatctttctaatcaggatagcgtttttaacacacaagaagcgcgtgaactttta
tggatcttgcaggcagtgttgacaccagaaaaagatacagtgcttcgcactgcgttggcc
actagccagctaggtttcgacgctgtcgctattgacacactgaacaaagacgaacgacgt
tgggaagagcgcgttgtggaattcgttggatatcgtgagcgctggcaaaaaagcggagta
ttaccaatgctgcgtcagatgatgaagaactaccatattgcggaaaattttttggcaagc
caaggtggagaacgccgattgactgacttgttgcatttaggtgaattgctgcagcaagct
tccacacagttaggaaacgaatatgcacttgtccgctggttcaggttgcaaatagcttct
cctaacctgcaaatggaaaatcagcaattacggttacaaagtgatcgtcaattagtgaaa
attatcacaatacataaatcaaaagggatggaatacccattagtttttttgccgtttatg
gccgattttcgcatacaaaagcggccgctgttccacgatcgtgaaacttacgtggcatgg
ctagatcttcgcgtaacgcaggatagcttaaggctagcggaagaagagcgattggcggag
gatttgcggctgctgtacgtggcggtaacacgctctatttatcattgcagttttggtatt
gctccactgtgtcgcggtaaccgtaaaaaaaccggcgctagcaatttacatctcagtgct
ctgggatatttaatccagcaaggccagagtggtgacgccgataatttacgtaaatgctta
gctgagctggtaaaccgcgccgatggcgatattatgttgtgcgaagcgcgggtcgcagcg
gggaaaccgcttactcctgcagcagcgccagcgcaagcgctaagcgctcgccactttcct
gaactgctgcacgatccatggcgggttagcagctattccgaattgcaacgtcatagtagc
tcggcggtgatggaattacagccgttgttaaatattgacgctgcatggaaggacaatcag
cagaaaatgctacagctaactccgcatagctttccgcgcggtgtggcaccgggaacattt
ttgcacggtttgcttaaaaccttagattttaatcagccactggatctgcaatggcttaac
aaacaactagcacaacagggtatcgatgctgtttggttgccagtaatagcagactggatg
gaaaaaattatcactataccactggacggtaactcgttctctctcgtgcagttgacacat
gacagccgacaggctgaactacaattttatctttccattgatgctgtagtgcaggcacgc
gatctagatcagatctgcaagcattacgatcttttatcggcgcgttgttcgccactggat
tttccccagatcaagggaatgttacaagggtttattgacttagttttccgttggcatgat
cgatattatttagtagactataaatttaactggttgggagaaacgagtgccagttacaca
caattgacaatggagcaggctatggttgctcaccgatatgatttacaatatcagctatat
accctagcgttacaccgctatctacgtcaccgtctggcagattattattattcgcgcgat
ttcggcggcgtgtattatctgtttttgcgcggtattgatgcgacacggccgggaaatggc
gttttttactgtcgcccggacagcgccctaatcgacgaattagatgccttattcactggc
gcatgcaaccagtaa
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