Candidatus Doolittlea endobia: MHIR_DE00512
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Entry
MHIR_DE00512 CDS
T04480
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
den
Candidatus Doolittlea endobia
Brite
KEGG Orthology (KO) [BR:
den00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
den03032
]
MHIR_DE00512 (topA)
03400 DNA repair and recombination proteins [BR:
den03400
]
MHIR_DE00512 (topA)
Enzymes [BR:
den01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
MHIR_DE00512 (topA)
DNA replication proteins [BR:
den03032
]
Prokaryotic type
DNA Topoisomerases
MHIR_DE00512 (topA)
DNA repair and recombination proteins [BR:
den03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
MHIR_DE00512 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Toprim_4
Caprin-1_dimer
DUF2399
Nsp1_C
Motif
Other DBs
NCBI-ProteinID:
CUX96765
UniProt:
A0A143WSP1
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All DBs
Position
I:complement(614682..617276)
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AA seq
864 aa
AA seq
DB search
MGQALVIVESPAKAKTISKYLGEDYVVKSSAGHIRDLPISGSTSQKNTNASKKKASKLDP
QLALINRMGIDPYHGWKVRYEILPNKEKVVTELKALAGKADRIYLATDLDREGEAIAWHL
REVIGGDNKRFSRVVFNEITRNAITKAFEKPGTLNIDRVNAQQARRFMDRIVGYMVSPLL
WKKIARGLSAGRVQSVAVRLVVEREREIKAFIPEEYWKLHADLQTEQATPLLMQIISQKE
KPFKPVNYQQIQAALDKLENANYVVSARSNKSTSSKSGAPFTTSTLQQAASTNLSYSIKK
TMILAQRLYEAGHITYIRTDSTSLSQSALNMARAYISESFGSSYLPKQANDYANKNTAQE
THEAIRPSDVSVLAEQLKDMAADAQKLYQLIWCQFIACQMAPAQYASTKLTVTTGEFQLL
ASGRTLRFDGWTKVMPVLCKSEEGQALSEVEVGQTLTLIKLLASQHFTKPPARYSEASLV
KELEKRGIGRPSTYVSIISTIQDRGYVHAKNRRLYAEKIGEIVTDRLEENFRDLMNYDFT
AKMEDTLDQVETNQKEWKRVLDTFFQKFSKQLENAKKNPEDGGMRPNQMVITSINCPVCA
CKMGIRTASTGVFLSCSGYTLPMTERCKNTISLISEAETLNVLEGDDAETNALRARCRCG
KCGTAMDSYIIDSRHKLHVCGNNPLCEGYDIEQGEFLIKGYNGPIVECEKCCANMYLTLG
RFGKYMACTNDNCKNTRKILRNGNVAPLKEDPVPLPELLCEKSNAYFVLRDGAAGVFLAA
NTFPKSRETRAPLVAELVRFRDRLPEKLRYLADAPVTDDEDNSTSVRFSRKTKQQYIVSE
KYGKVTGWTSFHINGVWQVMKNKS
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgggtcaagctctcgttattgttgaatcaccagccaaagccaaaacgattagtaaatat
ttaggagaagactatgtggttaagtccagcgctggccatatccgcgatttgccaatcagc
ggttcaacaagtcaaaagaacaccaatgccagtaaaaagaaagcaagtaaactggacccg
caacttgcattaatcaatcggatgggtatcgatccttatcatggctggaaagtccggtat
gagattttacccaataaagagaaagtagtgaccgagttgaaagctttggcgggaaaagct
gatcgaatctacctcgcaaccgatcttgaccgagaaggggaggctatcgcttggcatcta
cgcgaagtaattggtggtgataataaacgtttcagccgtgttgtgttcaacgaaatcacc
cgaaatgccattaccaaggctttcgagaagccgggtacactgaatattgatcgggtcaat
gcccagcaggcgcggcgtttcatggatcgtattgttggctatatggtgtcaccgttgttg
tggaagaaaattgctcgtggtctatcggctggacgtgtccaatcggttgcggtccgactt
gttgtagaacgcgaacgggaaattaaagcgtttattcccgaagagtattggaaacttcat
gccgacttgcaaacggagcaggcaacgccgttgctcatgcagataatttcccaaaaggag
aaaccttttaagcccgtgaattaccagcaaattcaggcggctctagacaagcttgaaaac
gcgaattatgtggtcagcgctcgtagcaataaatcgactagcagcaagtcaggagcacca
ttcactacatcgacgctacaacaggcggccagcacgaacctaagctatagcataaaaaaa
actatgatcctagcgcagcgcttatatgaagctggacatatcacatatatacgtactgac
tccacaagcttgagtcagagtgcgcttaatatggctcgcgcttacatcagcgaatctttc
ggcagttcctacttgccgaaacaggctaatgactacgctaataaaaatactgctcaagaa
acacatgaagctatccgtccttctgacgttagcgttttagcggaacaactaaaagacatg
gcagctgatgcgcagaaactttaccaactcatatggtgtcagtttattgcttgtcaaatg
gcgcctgcacaatatgcttctacgaagcttaccgtcactacaggtgaatttcagctgctc
gccagtggccgcaccttacgttttgacggttggaccaaggtcatgccggtgctatgcaaa
agcgaagaaggccaggctttatcggaagtggaagtcggccagacactcacgcttatcaaa
ttgctggctagtcagcatttcactaaaccgcctgcccgctacagtgaagcctcgctagtg
aaagagctagaaaaacgagggattggccggccgtcaacctatgtttctattatctcgact
attcaggatcgcggttatgtccatgcgaaaaaccgccgtttgtatgcggaaaaaataggg
gaaatcgttaccgatcgtctagaagaaaacttccgcgatctgatgaattacgattttact
gccaagatggaagataccctcgatcaggtggaaactaatcagaaagagtggaaacgggtt
ctagatactttcttccagaagttcagtaaacagttggaaaacgccaagaaaaatccggaa
gacggcggcatgcggcctaatcagatggtgataactagcatcaactgcccagtttgtgcc
tgtaagatggggattcgtactgctagcacaggcgtgtttctcagctgttctggctatacg
ctgccgatgacagaacgctgtaaaaatactatcagtttaatatctgaagcagagaccctg
aacgtgctagaaggggacgatgcagaaaccaatgccttgcgcgcacgctgtcgctgtggg
aaatgcggcacagctatggacagttatattatcgatagtcgacataaactccacgtatgc
ggcaataacccgctatgcgaaggctatgatattgaacagggagagtttctcatcaaaggc
tataatggtccgatcgtagagtgtgaaaagtgctgtgccaatatgtatttgacgttggga
cgttttggtaaatacatggcctgcaccaacgacaactgcaagaacacccgcaaaatcctt
cgtaatggaaatgttgcgcctctaaaagaagatccagtgccactgcctgaactactgtgt
gagaagtcaaatgcttattttgtactgcgcgatggggcggcgggagtatttctagccgct
aacacgtttccgaaatcccgagaaacccgtgcgccgttagtagctgagttggttcgtttc
cgcgatcggctgccggaaaagctgcgctatttagccgatgcgcccgttacggatgacgaa
gataatagcacgtcagtgcgctttagccgtaaaaccaaacaacaatatattgtatcagaa
aaatacggcaaggtcaccggttggacatctttccacattaatggcgtatggcaggtgatg
aaaaataaaagctaa
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