Candidatus Doolittlea endobia: MHIR_DE00666
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Entry
MHIR_DE00666 CDS
T04480
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
den
Candidatus Doolittlea endobia
Pathway
den03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
den00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MHIR_DE00666 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
den03019
]
MHIR_DE00666 (deaD)
03009 Ribosome biogenesis [BR:
den03009
]
MHIR_DE00666 (deaD)
Enzymes [BR:
den01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MHIR_DE00666 (deaD)
Messenger RNA biogenesis [BR:
den03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MHIR_DE00666 (deaD)
Ribosome biogenesis [BR:
den03009
]
Prokaryotic type
rRNA helicases
MHIR_DE00666 (deaD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CUX96897
UniProt:
A0A143WTK5
LinkDB
All DBs
Position
I:complement(788626..790395)
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AA seq
589 aa
AA seq
DB search
MSKVVTSFAALGLKAPILNALTELGYENPSPIQSACIPHLLAGRDVLGMAQTGSGKTAAF
SLPLLQNIKPELAAPQVLVLAPTRELAVQVGKAFTDFAKYMQGINVIALYGGQRYDVQLR
TLRQGPQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENILAQVPAE
HQTALFSATMAEAIRRITRRFMNEPQEVLIQSSVNTRPDISQSYWTVQGIRKNEALGRFL
EAEDFDAAIIFVRTKNATLEVAETLERSGYNSAALNGDMNQALREQTLNRLKDGRLDILI
ATDVAARGLDVDRISLVINYDIPIDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERIMQLTIPEVDLPTAEVLSTRRLAKFAAKVQNQLESNDLDIYRALLVKLQPTEEPDMEM
LAAALLKMAQGERPLILPSDPVIARRPRREFRERDTYRESSKRPARRERRDLGAMDLYRI
EVGRNDGVEVRHIVGAIANEGDISSRYIGNIKLFASHATIELPKSMSSEMLSHFTRTRIF
NKPINMQFVGETQSRGSERRSSPSVGRGNYSGERRDGGRLLPNRISLLR
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaagtagtaacctcttttgccgctctagggctgaaagctcctatccttaatgcg
ctgactgagctcggttatgagaatccgtcgcccattcaatctgcctgcatcccacatctg
ctggcaggccgcgatgtactggggatggcgcaaaccggcagtggtaaaaccgcagctttt
tccctgccgttgttacagaatatcaaacctgaactggccgcgccgcaggtgctagttcta
gcaccgactcgtgaattagcggtacaggtaggaaaagctttcactgatttcgccaaatat
atgcaagggatcaacgtaattgctctgtacggtgggcagcgttatgacgtgcaattacgc
acgttgcgtcaaggtccgcagatcgtggttggcacgccgggtcgtctgcttgatcatcta
aaacgcggtacactggatttgtctaatttgagcggactggtgctagacgaagccgatgaa
atgctgcgtatgggttttattgaagacgttgaaaacattttggcacaggtgccagcagag
catcaaaccgcgctgttttccgctactatggcggaagcaattcgccgcatcactcgccga
tttatgaatgagccgcaggaagtactcattcaatccagcgtgaatacccgtcctgatatc
agccagagttactggacagttcagggtatacgaaaaaatgaagcgttagggcgttttctg
gaagcggaggattttgacgctgccattatttttgtgcgaactaaaaatgcgaccttagaa
gtggcagaaacgcttgaacgtagcggttataatagcgccgctttgaatggtgacatgaat
caagcgctacgcgagcaaacgctgaatcgcttgaaggacggccgcttggatattctaatt
gctactgacgtcgcggctcgcggcttggacgttgatcgtatcagcctggtgataaactat
gatattccgatagattccgaatcctacgtacaccgtatcgggcgtaccggccgtgctggc
cgtgctggacgagcgctgttattcgtggaaaaccgtgagcgccgtttactgcgcaatatt
gagcgcattatgcaattaaccatcccggaagtagatctaccgaccgctgaagtgctgagt
acccgtcgcttagctaagtttgccgctaaggtgcaaaatcagctggaaagtaatgatctt
gatatataccgcgcactgctggtaaaattacagccgacggaagaacctgatatggaaatg
ttggcggcggcgcttttaaaaatggctcaaggcgaacgcccactgatcctgccgtcagat
ccggtaattgcgcgtcgcccgcgccgcgagttccgtgagcgcgacacgtaccgggaaagc
agcaaacgtccagcgcgccgtgaacgtcgcgatctaggcgcaatggatctctaccgtatc
gaagtaggccgtaacgatggagttgaagtccgtcatatcgtcggcgcgattgccaacgaa
ggagatatcagcagtcgctatattggaaatattaaattattcgcctcgcacgcgaccata
gaactgccgaagagcatgtcgagtgaaatgttgtctcacttcactcgtacgcgtattttc
aacaaaccgataaatatgcagttcgtcggcgaaacgcaatcgcgcggcagcgaacgtcgc
agtagtccgagtgtcggtcgtggaaattatagcggtgaacgccgggatggcgggcgtctc
ctacctaaccggatatcgttgttgcgatag
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