Candidatus Doolittlea endobia: MHIR_DE00667
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Entry
MHIR_DE00667 CDS
T04480
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
den
Candidatus Doolittlea endobia
Pathway
den03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
den00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MHIR_DE00667 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
den03019
]
MHIR_DE00667 (pnp)
03016 Transfer RNA biogenesis [BR:
den03016
]
MHIR_DE00667 (pnp)
Enzymes [BR:
den01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
MHIR_DE00667 (pnp)
Messenger RNA biogenesis [BR:
den03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MHIR_DE00667 (pnp)
Transfer RNA biogenesis [BR:
den03016
]
Prokaryotic type
tRNA degradation factors
MHIR_DE00667 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH_2
aRib
S1_2
DUF4172
Spt6_S1
KH-I_KHDC4-BBP
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
CUX96898
UniProt:
A0A143WT39
LinkDB
All DBs
Position
I:complement(791001..793118)
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AA seq
705 aa
AA seq
DB search
MLNPIVRKFQYGQYTVTLETGMMARQATAAVMVSMDDTAVFVTVVSAKQAKQKQSFFPLT
VNYQERTYAAGRFPGGFFRREGRPSEGEILISRLIDRSIRPLFPKSFLNEVQVIATVVSV
NPQVSPDIVAIIGASAALSLSGIPFNGPIGAARIGYIDDQYTLNPTQDELIRSRLDLIVS
GTQNAVLMVESEAKLLNEDQMLSAVVYGHDQQKIVIDNINQLVAKTGKPKWQWQAQEVNV
DLQVRIAELAESRLGDAYRITEKQERYAAVDAVKADVVEALTVENETLDSYKIKDLLEIL
EKNIVRSRVLRGEPRIDGREKDMIRSLDIRTGVLPRTHGSALFTRGETQALVTATLGTER
DAQNIDELTGERTDRFLLHYSFPPYCVGETGVVGSPKRREIGHGRLAKRGVLAVMPNASE
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGVAMGLVKEGNNFVVLSD
ILGDEDHFGDMDFKVAGSCEGIAALQMDIKIEGITREIMQVVLNQAKSARMHILSVMERA
ISSPRGDISEFAPRIHTIKISSHKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKVAAT
DGDKARHAIRRIEEITAEIEVGRTYNGKVTRIVDFGAFVAISGGKEGLVHISQIANKRTE
KVADCLALGQAVPVKVLEMDRQGRIRLSIKDASSSGQESVIPKVK
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
ttgctaaatccgattgttcgcaagtttcaatacggtcagtataccgtcaccctagaaaca
ggtatgatggcccgccaggcaactgccgcagtcatggtaagcatggatgacacagcggtg
tttgtaactgtcgtgagtgctaaacaagcaaagcagaaacagagtttctttccgcttact
gtcaactatcaggagcgaacctacgccgcgggccgtttcccaggggggtttttccggaga
gaaggccgtccgagtgaaggagaaatactaatttctcgtctgattgatcgttctatccgc
ccgctattcccgaagagttttttgaacgaagtgcaggttatcgctaccgtagtttcggtt
aacccgcaagtcagccccgatatcgtagcaataattggcgcttccgctgcgctgagcttg
tccggtatcccgttcaacggccctattggcgccgcacgtattggttacattgatgaccag
tatactctgaacccgactcaagacgaattaatcagaagccgtttggatctgatagtttcc
ggtacgcagaacgctgttctaatggtagagtctgaagcgaagctgctgaacgaagatcag
atgctaagcgccgtagtctacgggcacgatcagcagaagatcgtgatcgataacattaat
caattagtggctaaaaccggcaagccgaaatggcagtggcaggcgcaagaagttaatgtc
gacctgcaggtgcgtatcgccgaactagcagagtcccgtttaggcgacgcttatcgcatc
actgaaaaacaagagcgctatgccgcggttgatgctgttaaggccgatgtcgttgaagcc
ttaacggtagaaaatgaaacattagattcatataagatcaaggacctcttagagatacta
gagaaaaatatcgtgcgtagtcgtgtactgcgtggcgaaccgcgtattgacggacgtgaa
aaagatatgattcgtagcttggacatacgaaccggcgtattgccacgcacccatgggtca
gcattattcactcgaggtgaaactcaggcgttggtcactgctactctaggtaccgagcgc
gatgcgcagaatattgatgaattgacaggtgaacggacagaccgcttcttgctgcattat
agtttccctccgtactgcgtaggtgaaactggtgtggtaggatcgccgaaacggcgagaa
atcggccacggtcgtctagctaagcgcggtgttttagctgtaatgccaaacgctagcgaa
ttcccgtatactgtgcgcgtggtatcggaaatcaccgagtcaaacggttcttcttccatg
gcttctgtgtgcggagcgtcgctggcgctaatggacgcgggggtgcccattaaagcggcc
gttgccggtgttgccatgggtctggtgaaagaaggtaataactttgttgtattatctgat
attttaggtgatgaagatcattttggtgatatggattttaaagttgctggaagttgtgaa
ggtatagctgcgctgcaaatggacattaaaattgaaggtatcactcgcgaaatcatgcaa
gtagtactaaatcaggccaagagtgcacgtatgcatattttaagcgtgatggagcgagcg
atcagttctccacgcggcgatatttccgaattcgcgcctcgcatacatactattaaaatt
agttcccataagatcaaggatgtaattggtaaaggcggctcggttatccgagcgctgacg
gaagaaaccggcacgacaatagaaatcgaagatgacggaaccgtaaaggtggcggctacc
gacggcgataaagcccgtcacgctatccgtcgcatcgaagaaattaccgccgaaatcgaa
gtaggccgcacttataatggcaaagtgacccgcatcgtagatttcggcgcttttgttgct
attagtggtggcaaagaagggcttgtgcatatctctcagatcgccaataaacgcacagag
aaagtggctgattgtctagcgctaggccaagcagtcccagttaaagtcctggaaatggac
cgacagggtcgcattcgcctaagtattaaggacgctagttcttccggccaggagtctgtg
atacctaaagtaaaataa
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