Dyadobacter endophyticus: ACN9ML_03375
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Entry
ACN9ML_03375 CDS
T11334
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dend Dyadobacter endophyticus
Pathway
dend03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dend00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ACN9ML_03375 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dend03400
]
ACN9ML_03375 (ligD)
Enzymes [BR:
dend01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ACN9ML_03375 (ligD)
DNA repair and recombination proteins [BR:
dend03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ACN9ML_03375 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XRV40986
LinkDB
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Position
complement(843900..846632)
Genome browser
AA seq
910 aa
AA seq
DB search
MSLTKYNEKRTFDKTPEPKGGKADNSELIFVIQKHDASRLHYDFRLEMGGVLKSWAVPKG
PSTDPSVKRLAMMVEDHPYDYKDFEGIIPEGNYGAGTVMVWDFGTYEPLEEVDGKLRAVE
GKKAREKLALKELHSGSLKVRLNGKKVKGEYALVKTKGMEENAWLLIKHRDKFASEDDIT
QKDRSAVTRRTLQGIEKDGDAVWESNHEEKKSAETKGSAKSKAPKTEAKDPAEEAAAEKK
SPDFDVAAILKKGKKQSFPDDLQPMLATLVDRPFDDPGWEYEVKWDGYRALAYLNQGQAN
LRSRNKKSFNDKFYPIYQQLQDWKINGVIDGEIVVINEKGLSDFNALQNWRSEADGELVY
YAFDILWLEGKSLIHLPLTERKAILQSIVDENSPVQLGYSVSSEGNAFFEAAQKMGLEGV
IAKKSDSEYYPGIRTRDWLKIKINKRQEVIIAGYTLNEGSSKLFSALLLAAYEHGELHYV
GKVGTGFKEKQQKEMMALFKPLVTKKSPFKETPDYNKPSRFRPNPPHANATWLKPELVCE
ISFAEITADGVFRHPSFEGMREDKSAKDVVREVEKSTDEVVDEADHDTEKIIKKPAKAKR
KTLLNPKEETQVRKINGHEVKFSNLKKLYWPDDKIHKSELINYYYQVAPFILPYLENRPL
SLNRFPNGIQGKSFYQKDFTGKVPDWIKTTPYISQGENKNFMLCNDEATLLYMANLGAID
VNPWNSRIETPDNPDWCLLDLDPDATNTFEQVIETAQAIKGLLDSLNVPSYCKTSGSTGL
HIYIPLGARYSYDQCQLFAEWVAGQIQHQLPDFTSVERLTKNRKGKLYIDYLQNRPKATL
AAPYSVRPKPGATVSMPLHWDEVKKGLQLKDFTIYNAIERIQLEGDLFKPVLGEGIDLEE
VIGRTDGDTG
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgagccttaccaaatacaacgagaaacgcaccttcgacaaaactccggagcccaaaggc
ggcaaagcggacaatagcgagcttattttcgtaatccagaaacatgatgcgtcccgtctg
cattacgatttcagactggaaatgggcggcgtgctcaaaagctgggcggtgcccaaagga
ccttctaccgatccgtcggtgaaacggctggcgatgatggtcgaagatcatccatatgac
tacaaggattttgaaggcatcattccagaagggaattatggcgccggaacagtaatggtc
tgggattttggcacttatgagccgttggaagaagtagatggcaagctgagagcagtcgaa
ggcaaaaaagccagggagaaacttgcgcttaaagaactgcattcaggctctctgaaggtg
cggctcaatggcaagaaggttaagggagaatatgcattggtgaaaaccaaaggcatggaa
gaaaacgcgtggcttctcattaagcaccgcgataaattcgcctccgaagatgatattacc
caaaaggaccggtcggccgtgacgcgaaggaccttgcagggtattgaaaaggatggcgat
gccgtttgggaaagcaatcacgaagagaagaaatctgccgagacaaaaggttcagccaag
tccaaagcgcccaaaaccgaggccaaagatccggcagaagaagccgcggcagaaaaaaaa
agcccggacttcgacgtagcggcgattctgaaaaagggaaaaaagcaaagcttccccgat
gacctgcaaccgatgctcgctacactggtcgacaggccgtttgatgatccaggctgggaa
tatgaggtgaaatgggacggttaccgcgccttggcttacctcaatcaaggacaggccaac
ttgcggtcgcggaacaaaaaatcctttaatgacaagttttaccccatttaccagcaattg
caggattggaaaatcaatggcgtgatagacggagaaattgtcgtgatcaacgagaaagga
ttatcggatttcaatgcattacaaaactggcggagcgaggccgatggcgaactggtctac
tatgcattcgatattctctggctggaaggcaagagcctcattcatttgccgttaacggaa
cggaaagccattttgcaaagcattgtggacgaaaatagcccggtacaacttggttacagc
gtgtcgtcagagggtaacgcattcttcgaggcagcccaaaaaatgggcctggaaggcgtt
attgctaaaaaatcagacagcgaatactaccctggcatccgcacgcgcgactggctgaaa
atcaagatcaacaagcggcaggaggtcattatcgcaggctatacactcaacgaaggctcc
tccaagcttttcagcgccttgctgctagcggcttacgaacacggcgagctgcattatgtg
ggtaaggtcggtaccgggttcaaagagaagcagcaaaaggagatgatggcgctttttaag
ccgttggttaccaagaagagcccgtttaaagaaacgcccgactataacaaaccctcgcgt
tttcgcccaaacccgccgcacgcgaatgcgacctggcttaaacctgaattggtttgcgag
atcagctttgccgaaatcacagccgacggagtgttcaggcatccgtcgttcgagggaatg
cgggaggacaagtcggcgaaagacgtggtgcgggaagtagaaaaatcaaccgatgaagtt
gtcgacgaagcagatcacgacacggagaaaattattaaaaaacccgccaaagcgaaaaga
aagacacttttaaacccgaaagaagaaacccaggtacggaaaattaatgggcatgaggtc
aaattttcaaatttgaagaaactctactggcccgatgataagattcacaaaagtgagctg
atcaactattactaccaggtcgcaccattcattttgccctatctcgaaaaccggccgctt
tcgctcaaccgttttcccaacggcatccagggtaaaagcttttaccagaaagactttacc
ggaaaggtacccgactggatcaaaaccacaccttacatatcccaaggcgagaacaagaac
ttcatgctctgcaacgatgaggccacgctgctctacatggctaacctcggcgccatagac
gtaaatccctggaacagccgcatcgaaacccccgacaatcccgattggtgcctgctcgac
ctcgacccggacgcgaccaacaccttcgaacaggtgatcgaaaccgcgcaggcaatcaaa
ggcttgctggattctttaaatgttccctcctactgcaaaacctccggctccacgggtctg
catatttacattccactcggtgcccgatacagctacgatcaatgccagctcttcgccgaa
tgggtggccgggcagatacagcaccaactcccggatttcaccagcgtggagcgactcaca
aaaaaccgcaaaggcaagctttacatcgactacctgcaaaacaggcccaaagcgacgctc
gccgctccctactcggtccgcccgaaacccggcgcgactgtttcgatgcccctgcattgg
gatgaggtgaagaaaggacttcaactgaaagactttacaatttacaatgcgatagagcgg
atccagcttgaaggcgacctctttaaacccgttttgggcgagggaatcgacctggaagaa
gtgattggaagaacggatggcgacactggctaa
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