Denitratisoma sp. DHT3: B9N43_04040
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Entry
B9N43_04040 CDS
T10559
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
deni Denitratisoma sp. DHT3
Pathway
deni03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
deni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B9N43_04040 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
deni03400
]
B9N43_04040 (mfd)
Enzymes [BR:
deni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B9N43_04040 (mfd)
DNA repair and recombination proteins [BR:
deni03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B9N43_04040 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
SNF2-rel_dom
Glyco_tran_WecG
CTE_SPB4
AAA_16
ERCC3_RAD25_C
AAA_30
DOCK_N
Motif
Other DBs
NCBI-ProteinID:
QDX80494
UniProt:
A0A518U739
LinkDB
All DBs
Position
877793..881236
Genome browser
AA seq
1147 aa
AA seq
DB search
MPDSLPAPLPRIAPVSLPKPGARLDLPLLAGSADALALAQLALPGQLLVVVAASPLEAQR
LQDEISWFAPGLKVHLLPDWETLPYDNFSPHQDLISERLATLYAVTRGECEVLILAAATA
LARVAPPSFLAAHTFFIKKGETLHLDRLREQLTVAGYQHVTQVVAAGEYSVRGGLVDLFP
MGTALPYRIELFDDEVETIRTFDVDSQRTLYPVPKIRLLPAREFPLGEAGRNKFRSRFRE
TFEGDASRIALYKDVSSGTLPAGIEYYLPLFFDQTATLFDYLPATTTLALHGDVPAAIGE
FWADTRSRYKMLGGDRSRPVMAPADLFLSDEEFFAATHAYPALRLGSEGKGEALASRLPA
VEVNRKAEDPLAALKTFLHGFGGRVLLLAESPGRRETMQEYLSEHGVVSQPCADCAGFAA
ADAPLMLGVAPLSGGFLLPQAKLAFITENELYAATARPRHKRDTARRANLEGWLRDLSEL
KIGDPVVHESHGIGRYLGLVHMDYGDGDTEFLHLQYAGGAALYVPVSQLQVISRYSGADP
ESVELHRLGSGQWEKAKKRAAEQVRDTAAELLHLYAQRAARQGHTFEFNTHDLEAFADGF
GFEETPDQLAAINAVVADMRSGKPMDRLVCGDVGFGKTEVAMRAAFVAVSGGKQVAVLCP
TTLLAEQHYQNFSDRFADWPVKVAELSRFRSAKEQAEAIHGLAEGRIDILIGTHRLLQKD
VNFQRLGLVIIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMSLEGLRDFSVIA
TAPQKRLAIKTFVAKWAASQVREACLREFKRGGQVYLLHNEVETIENMRERLAELLPEAR
IVVGHGQLPERELERVMREFTQQKHNLLLCSTIIETGIDNPHANTIIINRADRFGVAQLH
QLRGRVGRSHHQAYAYLLTDEHAKPTAQAQRRLEAIQAMEELGSGFFLAMHDLEIRGAGE
VLGENQSGEIQEIGFALYTNMLNAAVKALKEGKALPDLTQPLSVTSEINLRTPALLPDDY
CPDVHERLTLYKRLANCEDEDSLRALREELIDRFGEPAPQALALLETHRLRLLGDPLGVS
KLDAGPQSIQVQFVPNPPIDPMNVIRLIQSDRSYKLAGQDKLTWHKPTSNLQERVAAVRE
LFGKLSA
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
gtgccggattccctgcccgcgcctctgccgcgcattgctcccgtttccctgcccaagccg
ggtgcccgcctcgatcttcccctcctcgccggttccgccgacgcgctggccttggcgcaa
ctggcgttgcccgggcaattgcttgtggtggtggcggccagtccgctggaggcccagcgc
ctgcaggatgagatctcctggttcgcgccgggactcaaggtccatttgctgccggactgg
gaaaccctgccctacgacaacttctcgccgcaccaggacctgatctccgaacgcctggcg
acgctctacgcggtgacccgcggcgaatgcgaggtgctgatcctcgccgccgcaacggcg
ctggcgcgggtggcgccgccgagcttcctggcggcccacacctttttcatcaagaagggt
gagaccctgcacctggacaggctgcgcgagcagttgacggtggcgggctaccagcacgtc
acccaggtggtggcggcgggcgaatacagcgtgcgcggcgggttggtggacctgttcccg
atgggcaccgccctgccctatcgcatcgagctgttcgacgacgaggtggagacgatccgc
accttcgacgtggatagccagcgcacgctctatccggtgccgaagatccgcctgctgccg
gcgcgggagttcccgctcggcgaagccggacgcaacaagttccgcagccgcttccgcgag
accttcgagggcgacgcctcgcgcatcgcgctgtacaaggacgtctccagcggcaccctg
ccggcgggcatcgagtattacctgcccctgttcttcgaccagacggcgacgctgttcgac
tatctgccggcaacgaccaccctggcgctccacggcgacgtgccggcggccatcggcgaa
ttctgggccgacaccaggagccgctacaagatgctgggcggcgaccgttcccgtccggtg
atggcgccggccgacctgttcctgagcgacgaggagttcttcgccgccacccacgcctac
cccgccctgcgcctgggcagcgaaggcaagggcgaggcgctcgcgagccgccttcccgcg
gtggaggtgaatcgcaaggcggaagatcccctggcggcgctgaaaaccttcctgcacggc
ttcggcggccgcgtgctgctgctggccgaatccccggggcggcgcgagacgatgcaggaa
tacctgtcggaacacggtgtcgtttcccagccctgcgccgactgcgctggcttcgccgcg
gccgacgcgcccctgatgctgggcgtggcgccgctctccggcggcttcctgctgccgcag
gcgaagctggccttcatcaccgagaacgagctctacgccgccacggcgcggccccgccac
aagcgcgacacggcccgccgcgccaatctggagggctggttgcgcgacctgtcggaactc
aagatcggcgacccggtggtgcatgagtcgcatggcatcggccgctatctgggcctggtc
cacatggactacggcgacggcgacacggagttcctgcatctgcaatacgccggcggcgcc
gcgctctacgtgcccgtatcccagttgcaggtgatctcccgctacagcggcgccgatccg
gaaagcgtggaactgcaccggctgggctcgggccagtgggagaaggcgaagaaaagggcc
gccgagcaggtgcgcgacacggcggcggaactgctgcatctgtatgcccagcgggcggcg
cgccagggccacacgttcgaattcaacacccacgacctggaggccttcgccgacggcttc
ggtttcgaggagacacccgaccagctggccgcgatcaacgccgtggtggccgacatgcgc
tcgggcaagccgatggaccggctggtctgcggcgacgtcggtttcggcaagaccgaagtg
gcgatgcgcgccgccttcgtcgccgtgtccggcggcaagcaggtggcggtgctgtgcccc
accaccctgctggcggaacagcactatcagaacttttccgaccgcttcgccgactggccg
gtgaaggtggcggagctgtcgcgcttccgctccgccaaggagcaggcggaagccatccac
ggcctggccgaaggcaggatcgacattctgatcggcacccatcgcctgctgcagaaggat
gtgaacttccagcgcctgggtctggtgatcatcgacgaggagcatcgcttcggcgtgcgc
cagaaggaggcgctgaagaccctgcgcgccgaggtggacgtgctgaccctgaccgcgacg
ccgattccccgcaccctgggcatgtccctcgaagggctgcgcgatttctcggtgatcgcc
accgccccgcagaagcggctggcgatcaagaccttcgttgccaaatgggccgccagccaa
gtacgcgaagcctgcctgcgcgagttcaagcgcggtggccaggtctatctgctgcacaac
gaggtggagaccatcgagaacatgcgcgagcgcctggccgagctgctgcccgaggcccgc
atcgtcgtcggccacgggcaactaccggagcgcgagctcgagcgagtgatgcgggaattc
acccagcagaagcacaacctgctgctgtgctccaccatcatcgagaccggcatcgacaat
ccccacgccaacaccatcatcatcaaccgggccgaccgcttcggcgtcgcccagttgcac
cagttgcgcggacgcgtcggccgctcccatcaccaagcctacgcctacctgctcaccgac
gagcacgccaagcccacggcccaggcccagcgccggctggaggcgatccaggcgatggag
gaactgggttccggcttcttcctcgccatgcacgacctggagatccgcggcgccggcgaa
gtgctgggcgaaaaccagagcggcgaaatccaggagatcggcttcgccctgtacaccaac
atgttgaatgcggcggtgaaggcgctgaaggaaggcaaggcgctgccggacctgacccag
ccgctgtccgtcacctcggaaatcaatctgcgcacgccggccctgctgccagacgactac
tgtcccgacgtccatgaacggctcacgctctacaagcgcctggccaattgcgaggacgag
gacagcctgcgcgcgctgcgcgaggaactgatcgaccgcttcggcgaaccggcgccgcag
gccctggccctgctggaaacccaccgcctgcggctgctgggcgatccgctgggcgtctcg
aaactggacgcgggcccgcagtccatccaagtacaattcgtgccgaatccgcccatcgac
ccgatgaacgtcatacgcctgatccagtccgaccgcagctacaagctggccggccaggac
aagctgacctggcacaagccgacctccaatctgcaggagcgagtggcggcggtacgcgaa
cttttcggcaagctcagcgcctga
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